Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H11
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938 37 0.014
01_01_1137 + 9017211-9018584 31 0.69
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 28 4.8
09_04_0244 - 15984862-15984978,15985054-15985119,15985701-159857... 28 6.4
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159... 27 8.5
03_02_0127 + 5777564-5779879 27 8.5
01_07_0030 + 40601063-40601182,40601684-40602116,40602217-406023... 27 8.5
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 27 8.5
>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
Length = 463
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 94 DDSPVNYGYVFALCEHMGCGTWTVTHAEGV--LLAADETDSKSLHFEGG 234
D SP YG+VF C+H+ GT TVTH + AA +K EGG
Sbjct: 254 DVSPDFYGWVFPKCDHVAVGTGTVTHKPDIKKFQAATRLRAKD-RIEGG 301
>01_01_1137 + 9017211-9018584
Length = 457
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 94 DDSPVNYGYVFALCEHMGCGTWTV 165
D SP YG+VF C+H+ GT TV
Sbjct: 235 DVSPDFYGWVFPKCDHVAVGTGTV 258
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 169 HAEGVLLAADETDSKSLHFEGGLPVTSLLLSSIIRTYKEQKKPSPF 306
H++G+LL++ E + E + + LSS ++++ Q KP PF
Sbjct: 1732 HSDGILLSSPEEQNVVSCLEYAILKNIVELSSEVQSHLNQLKPIPF 1777
>09_04_0244 -
15984862-15984978,15985054-15985119,15985701-15985793,
15987284-15987410,15988710-15988840,15989485-15989766,
15989852-15989985,15990083-15990292,15990456-15990486
Length = 396
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 67 KNLIQLLKKDDSPVNYGYVFALCEHMGCGTWTVTHAEGVLLAADETDSKSLHFEGGLPVT 246
K+++ L+ D V + + +H+G TW +T A V ++ D+ + EG + +
Sbjct: 71 KSIVSLISSVDGKVLFTCSGTMVDHVGSATWILTSATLVRKCDNDYDA---YQEGDVKIE 127
Query: 247 SLLLSSII 270
LL + I
Sbjct: 128 VLLHNKTI 135
>11_06_0361 - 22711200-22712180,22712523-22712729,22715205-22715903,
22717848-22717979,22720422-22721180,22721241-22721453
Length = 996
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 37 GSVFDKEDALKNLIQLLKKDDSPVNYGYVFALCEHMGC 150
G F KE LKNL QL K S +N+ + LC + C
Sbjct: 916 GKAFLKE--LKNLTQLRKLGVSGINWKNIQELCSAVSC 951
>03_02_0127 + 5777564-5779879
Length = 771
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 392 KLPSHLLMMCPHRSA*RXKARNT*RRNLT 478
KLPSHL + HRSA ++++ +RNL+
Sbjct: 68 KLPSHLNNLTLHRSAILDRSKDVRQRNLS 96
>01_07_0030 +
40601063-40601182,40601684-40602116,40602217-40602326,
40602506-40602550
Length = 235
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 238 PVTSLLLSSIIRTYKEQKKPSPFSADQRYKFA--EYLLSRR 354
P T++ +S+ TY +P P+ D RY E L+SRR
Sbjct: 67 PSTNITDNSLSETYHLVSRPPPYDTDPRYARVQREGLVSRR 107
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +1
Query: 70 NLIQLLKKDDSPVNYGYVFALCEHM----GCGTWTVTHAEGVLL--AADETDSKSLHFEG 231
NL L+K+ SP + + +H G + T A+ L + TD + +G
Sbjct: 2190 NLHTLVKQTTSPHQFWSSLSSSDHSAFLEGFELFGSTKAKNAFLICTSASTDVNGSNLDG 2249
Query: 232 GLPVTSLLLSSIIR 273
G +TSLL+SS+++
Sbjct: 2250 GEELTSLLVSSLLK 2263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,235
Number of Sequences: 37544
Number of extensions: 324398
Number of successful extensions: 671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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