Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H11
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)         36   0.033
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)
          Length = 512

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 217 LHFEGGLPVTSLLLSSIIRTYKEQKKPSPFSADQRYKFAEYLLSRRSVNSAK 372
           + F+GGL  T+ +++   +  +  K+    S +Q  KFA Y+LSR+ V   K
Sbjct: 183 VEFDGGLVPTAEVVTGAYKLGEYVKRTPTISEEQLVKFANYILSRKHVQEVK 234


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 282 FVCSNNRGE*QGSDW 238
           F C+NN+G  QG DW
Sbjct: 241 FTCTNNKGTGQGKDW 255



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 282 FVCSNNRGE*QGSDW 238
           F C+NN+G  QG DW
Sbjct: 256 FTCTNNKGTGQGKDW 270



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 282 FVCSNNRGE*QGSDW 238
           F C+NN+G  QG DW
Sbjct: 286 FTCTNNKGTGQGKDW 300


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = -3

Query: 572 SPSLVPD*ATTSSVFILRTGRPIRSVIENSTESDSDVTYFLPXIAMLIGVGTSSASVMAA 393
           S SLV +   TSS  ++ +G+   S++  S ++ S      P    ++    +  S  A 
Sbjct: 433 SSSLVAESGQTSSSLVVESGQTSSSLVAESGQTSSSFV-AEPKAVSVLATTVTQTSASAT 491

Query: 392 SSNRAAPFAEFTERRDRRYSA 330
           S+    P    T  R+  +SA
Sbjct: 492 STIILVPSPSQTHSRNDTFSA 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.132    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,391,550
Number of Sequences: 59808
Number of extensions: 366154
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)