Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H11
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74470.1 68414.m08627 geranylgeranyl reductase identical to g...    38   0.007
At4g31850.1 68417.m04525 pentatricopeptide (PPR) repeat-containi...    27   7.1  
At1g31510.1 68414.m03863 F-box family protein-related contains w...    27   7.1  
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ...    27   9.4  
At2g32120.2 68415.m03926 heat shock protein 70 family protein / ...    27   9.4  
At2g32120.1 68415.m03925 heat shock protein 70 family protein / ...    27   9.4  
At1g69370.1 68414.m07962 chorismate mutase, putative similar to ...    27   9.4  
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t...    27   9.4  

>At1g74470.1 68414.m08627 geranylgeranyl reductase identical to
           geranylgeranyl reductase GB:Y14044 [Arabidopsis
           thaliana] (involvement: chlorophyll, the tocopherol and
           the phylloquinone pathways Eur J Biochem 1998 Jan
           15;251(1-2):413-7)
          Length = 467

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 49  DKEDALKNLIQLLKKDD-SPVNYGYVFALCEHMGCGTWTVTH 171
           +K    ++L ++   DD SP  YG+VF  C+H+  GT TVTH
Sbjct: 242 EKMTYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTH 283


>At4g31850.1 68417.m04525 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1112

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 540 LLRFHTADRTSDQISDRELYGVRFRRYVFLAFXRYADRCGHIIS 409
           LLR H  D   +   + E  GV+   Y ++ F  Y  + G  +S
Sbjct: 408 LLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS 451


>At1g31510.1 68414.m03863 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; ; similar to  F-box protein family, AtFBX9
           (GI:20197985) [Arabidopsis thaliana]
          Length = 309

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 191 PLMKLIPSHFISKVACQSLPCYS 259
           P   + PSHFI    C  + CYS
Sbjct: 236 PKFPIYPSHFIENNECPKVECYS 258


>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
           protein low similarity to enhancer binding protein-1;
           EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
           kDa ribonucleoprotein, chloroplast precursor (28RNP)
           {Nicotiana sylvestris}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 304

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 436 IAXKGKKYVTSESDSVEFSITDLIGRPVRSMKTEEVV 546
           ++ K KK   +E+  +EF   D +GRP+R  K+++ V
Sbjct: 236 VSFKTKKQ--AEAALIEFQGKDFLGRPIRLAKSKQFV 270


>At2g32120.2 68415.m03926 heat shock protein 70 family protein /
           HSP70 family protein similar to SP|P22953 Heat shock
           cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
           thaliana}; contains InterPro accession IPR001023: Heat
           shock protein Hsp70
          Length = 563

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 506 IRSVIENSTESDSDVTYFLPXIAMLIGVGTSSASV 402
           + S  EN+ E  S  +  LP IA+ I +GTS  S+
Sbjct: 8   VASDSENTGEEKSSSSPSLPEIALGIDIGTSQCSI 42


>At2g32120.1 68415.m03925 heat shock protein 70 family protein /
           HSP70 family protein similar to SP|P22953 Heat shock
           cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
           thaliana}; contains InterPro accession IPR001023: Heat
           shock protein Hsp70
          Length = 563

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 506 IRSVIENSTESDSDVTYFLPXIAMLIGVGTSSASV 402
           + S  EN+ E  S  +  LP IA+ I +GTS  S+
Sbjct: 8   VASDSENTGEEKSSSSPSLPEIALGIDIGTSQCSI 42


>At1g69370.1 68414.m07962 chorismate mutase, putative similar to
           gi:5732016 and SP|P42738; contains Pfam profile:
           PF01817: Chorismate mutase
          Length = 316

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 356 ERRDRRYSANLYR*SALNGEGFFCSLYVLIIEESNK 249
           ER   RY+A+ Y   A   EGF  SL   ++ E+ K
Sbjct: 91  ERAQYRYNADTYDEDAFTMEGFQGSLVEFMVRETEK 126


>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 684

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 212 SHFISKVACQS---LPCYSPRLLEHTKSRRNPRHLVQINDTSSQSTFCRVVQ 358
           S+F+  + C S   + C S     H K  R+P  L +  DTSS   +C + +
Sbjct: 537 SYFLECIKCNSFLGIRCASLPFEAHYKHDRHPLILCRDEDTSSGLYWCEICE 588


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.132    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,676,314
Number of Sequences: 28952
Number of extensions: 248504
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)