Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H10
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.2  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   6.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -2

Query: 472 VPNSSASQRHKTLIFCLV*ALNTFSTLFLPKVKVLSHLSMVFETPGCLSSGKIPKPESFV 293
           V +S++S  ++     L   LN  S+L        SHLS       C S G  P    F+
Sbjct: 253 VESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAGFL 312

Query: 292 P 290
           P
Sbjct: 313 P 313


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 159 LLSCGN*LETKPTTACHRSVCT 224
           L+ CG   +T+  T   R  CT
Sbjct: 115 LMCCGRGYKTQEVTVVERCACT 136


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 400 STLFLPKVKVLSHLSMVFETPGCLSSGKIPKP 305
           STL +P VK+        E+   ++S   PKP
Sbjct: 388 STLNIPSVKIDEDQKCSIESITSVNSTSSPKP 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,553
Number of Sequences: 438
Number of extensions: 3684
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)