Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H10
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 145 2e-35
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 142 2e-34
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 140 8e-34
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 58 3e-09
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 58 5e-09
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 57 9e-09
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 55 3e-08
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 54 5e-08
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 54 5e-08
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 54 5e-08
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 54 5e-08
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 53 1e-07
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 53 1e-07
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 52 2e-07
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 52 3e-07
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 52 3e-07
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 51 5e-07
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 50 1e-06
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 50 1e-06
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 50 1e-06
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 49 2e-06
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 49 2e-06
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 49 2e-06
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 49 2e-06
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 49 2e-06
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 48 3e-06
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 48 4e-06
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 48 4e-06
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 48 4e-06
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 48 6e-06
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 47 1e-05
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 46 1e-05
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 46 2e-05
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 46 2e-05
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 46 2e-05
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 46 2e-05
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 45 3e-05
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 45 4e-05
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 45 4e-05
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 44 5e-05
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 44 5e-05
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 44 9e-05
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 43 1e-04
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 43 1e-04
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 43 1e-04
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 43 1e-04
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 43 2e-04
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 43 2e-04
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 43 2e-04
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 42 2e-04
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 42 3e-04
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 42 3e-04
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 42 3e-04
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 42 4e-04
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 41 5e-04
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 41 5e-04
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 41 6e-04
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 40 8e-04
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 40 0.001
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 40 0.001
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 40 0.001
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 40 0.001
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 39 0.002
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 39 0.002
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 39 0.002
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 39 0.002
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 39 0.002
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 39 0.003
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 39 0.003
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 38 0.003
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 38 0.005
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 38 0.005
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 38 0.005
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 38 0.006
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 38 0.006
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 38 0.006
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 38 0.006
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 37 0.008
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 37 0.008
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 37 0.008
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 37 0.008
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 37 0.008
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 37 0.008
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 37 0.008
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 37 0.008
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 37 0.010
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 37 0.010
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 37 0.010
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 35 0.013
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 36 0.014
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 36 0.014
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 36 0.014
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 36 0.018
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 36 0.024
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 36 0.024
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 36 0.024
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 36 0.024
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 36 0.024
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 36 0.024
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 36 0.024
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 35 0.032
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 35 0.042
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 35 0.042
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 35 0.042
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 35 0.042
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 35 0.042
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 34 0.055
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 34 0.055
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 34 0.055
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 34 0.055
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 34 0.073
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 34 0.073
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 34 0.073
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 34 0.073
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 34 0.073
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 33 0.097
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 33 0.097
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.097
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 33 0.097
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 33 0.097
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 33 0.13
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 33 0.13
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 33 0.13
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 33 0.13
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 33 0.17
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 32 0.22
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 32 0.22
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 32 0.22
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 32 0.22
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea... 32 0.30
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 32 0.30
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 32 0.30
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 32 0.30
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 32 0.30
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 32 0.30
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 32 0.30
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 32 0.30
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 31 0.39
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 31 0.39
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 31 0.39
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 31 0.39
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 31 0.52
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 31 0.52
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 31 0.52
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 31 0.52
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 31 0.52
At1g17720.2 68414.m02194 serine/threonine protein phosphatase 2A... 31 0.52
At1g17720.1 68414.m02193 serine/threonine protein phosphatase 2A... 31 0.52
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 31 0.68
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 31 0.68
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 31 0.68
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 31 0.68
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 31 0.68
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 31 0.68
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 31 0.68
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 30 0.90
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 30 0.90
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 30 0.90
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 30 0.90
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 30 0.90
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 30 1.2
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 30 1.2
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 30 1.2
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.2
At4g28620.1 68417.m04092 ABC transporter family protein identica... 29 1.6
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 29 1.6
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 29 2.1
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 29 2.1
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 29 2.1
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 29 2.1
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 29 2.1
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 29 2.1
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 29 2.1
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 29 2.1
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 29 2.1
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 29 2.8
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 29 2.8
At3g45370.1 68416.m04898 hypothetical protein 29 2.8
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 29 2.8
At5g60050.1 68418.m07530 PRLI-interacting factor-related contain... 28 3.6
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 28 3.6
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 28 3.6
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 3.6
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 3.6
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 28 3.6
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 28 3.6
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 28 3.6
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 28 3.6
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 28 3.6
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 28 3.6
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 3.6
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 3.6
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 28 4.8
At5g18420.3 68418.m02170 expressed protein non-consensus GC dono... 28 4.8
At5g18420.2 68418.m02169 expressed protein non-consensus GC dono... 28 4.8
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono... 28 4.8
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P... 28 4.8
At3g33230.1 68416.m04296 hypothetical protein 28 4.8
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 27 6.4
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 27 6.4
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 27 6.4
At2g14340.1 68415.m01604 hypothetical protein 27 6.4
At1g79360.1 68414.m09248 transporter-related low similarity to S... 27 6.4
At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 27 6.4
At5g40900.1 68418.m04966 expressed protein similar to GI:2827651... 27 8.4
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 27 8.4
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 145 bits (352), Expect = 2e-35
Identities = 63/106 (59%), Positives = 84/106 (79%)
Frame = +2
Query: 44 MSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLY 223
M+E L L+GT+C H +T IAT D+I++SSRDK++I+WKLT+++ +YG+ Q+R+
Sbjct: 1 MAEGLVLKGTMCAHTDMVTAIATPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMT 60
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
GHSHF+ DVVLSSDG +ALSGSWD LRLWDLA G++TRRF HTK
Sbjct: 61 GHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTK 106
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPK-YPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVL 256
GH W++ + +P I+S+S DKT+ VW L + + L GHS +++ V +
Sbjct: 147 GHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKL-----RNTLAGHSGYLNTVAV 201
Query: 257 SSDGNYALSGSWDKTLRLWDLAAGK 331
S DG+ SG D + LWDLA GK
Sbjct: 202 SPDGSLCASGGKDGVILLWDLAEGK 226
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/90 (27%), Positives = 44/90 (48%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
+ KLR TL GH+G++ +A +P + S +D +++W L + Y L + H
Sbjct: 181 QNCKLRNTLAGHSGYLNTVAVSPD-GSLCASGGKDGVILLWDLAEGKKLYSLEAGSII-H 238
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
S + S Y L + + ++R+WDL
Sbjct: 239 S------LCFSPNRYWLCAATENSIRIWDL 262
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYA--LSGSWDKTLR 307
I+S+SRD+T+ +W T E Y + + GH ++S V S + +S SWDKT++
Sbjct: 120 IVSASRDRTIKLWN-TLGECKYTISEAD--GHKEWVSCVRFSPNTLVPTIVSASWDKTVK 176
Query: 308 LWDLAAGKTTRRFEDHT 358
+W+L K H+
Sbjct: 177 VWNLQNCKLRNTLAGHS 193
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
+ GH+ ++ + + LS S D L +W L E+ +R GH+ + V
Sbjct: 59 MTGHSHFVQDVVLSSD-GQFALSGSWDGELRLWDLATGEST-----RRFVGHTKDVLSVA 112
Query: 254 LSSDGNYALSGSWDKTLRLWD 316
S+D +S S D+T++LW+
Sbjct: 113 FSTDNRQIVSASRDRTIKLWN 133
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1
Query: 484 GTHEDVLSVAFSVDNRQIVSGSR 552
G +DVLSVAFS DNRQIVS SR
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASR 125
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 142 bits (343), Expect = 2e-34
Identities = 65/106 (61%), Positives = 82/106 (77%)
Frame = +2
Query: 44 MSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLY 223
M+E L L+GT+ H +T IAT D+I+S+SRDK++I+WKLT+D+ YG+ Q+RL
Sbjct: 1 MAEGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT 60
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
GHSHF+ DVVLSSDG +ALSGSWD LRLWDLAAG +TRRF HTK
Sbjct: 61 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK 106
Score = 58.0 bits (134), Expect = 4e-09
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPK-YPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVL 256
GH W++ + +P I+S+S DKT+ VW L+ + + L GH+ ++S V +
Sbjct: 148 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-----RSTLAGHTGYVSTVAV 202
Query: 257 SSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV 364
S DG+ SG D + LWDLA GK E ++ +
Sbjct: 203 SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVI 238
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/87 (25%), Positives = 42/87 (48%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
KLR TL GH G+++ +A +P + S +D +++W L + Y L ++
Sbjct: 185 KLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSL-------EANS 236
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDL 319
+ + S Y L + + +++WDL
Sbjct: 237 VIHALCFSPNRYWLCAATEHGIKIWDL 263
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH+ ++ + + LS S D L +W L G+ +R GH+ + V
Sbjct: 59 LTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAA-----GVSTRRFVGHTKDVLSVA 112
Query: 254 LSSDGNYALSGSWDKTLRLWD 316
S D +S S D+T++LW+
Sbjct: 113 FSLDNRQIVSASRDRTIKLWN 133
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 484 GTHEDVLSVAFSVDNRQIVSGSR 552
G +DVLSVAFS+DNRQIVS SR
Sbjct: 103 GHTKDVLSVAFSLDNRQIVSASR 125
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 140 bits (338), Expect = 8e-34
Identities = 63/106 (59%), Positives = 82/106 (77%)
Frame = +2
Query: 44 MSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLY 223
M+E L L+G + H +T IAT D+I+++SRDK++I+WKLT+D+ +YG+ Q+RL
Sbjct: 1 MAEGLVLKGIMRAHTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLT 60
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
GHSHF+ DVVLSSDG +ALSGSWD LRLWDLA G+TTRRF HTK
Sbjct: 61 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTK 106
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPK-YPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVL 256
GH W++ + +P I+S+S DKT+ VW L + + L GHS +++ V +
Sbjct: 147 GHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKL-----RNSLVGHSGYLNTVAV 201
Query: 257 SSDGNYALSGSWDKTLRLWDLAAGK 331
S DG+ SG D + LWDLA GK
Sbjct: 202 SPDGSLCASGGKDGVILLWDLAEGK 226
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/90 (26%), Positives = 44/90 (48%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
+ KLR +L GH+G++ +A +P + S +D +++W L + Y L + H
Sbjct: 181 QNCKLRNSLVGHSGYLNTVAVSPD-GSLCASGGKDGVILLWDLAEGKKLYSLEAGSII-H 238
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
S + S Y L + + ++R+WDL
Sbjct: 239 S------LCFSPNRYWLCAATENSIRIWDL 262
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH+ ++ + + LS S D L +W L ET +R GH+ + V
Sbjct: 59 LTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLATGETT-----RRFVGHTKDVLSVA 112
Query: 254 LSSDGNYALSGSWDKTLRLWD 316
S+D +S S D+T++LW+
Sbjct: 113 FSTDNRQIVSASRDRTIKLWN 133
Score = 40.7 bits (91), Expect = 6e-04
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYA--LSGSWDKTLR 307
I+S+SRD+T+ +W T E Y + + GH ++S V S + +S SWDKT++
Sbjct: 120 IVSASRDRTIKLWN-TLGECKYTISEGD--GHKEWVSCVRFSPNTLVPTIVSASWDKTVK 176
Query: 308 LWDLAAGKTTRRFEDHT 358
+W+L K H+
Sbjct: 177 VWNLQNCKLRNSLVGHS 193
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +1
Query: 484 GTHEDVLSVAFSVDNRQIVSGSR 552
G +DVLSVAFS DNRQIVS SR
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASR 125
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 58.4 bits (135), Expect = 3e-09
Identities = 31/96 (32%), Positives = 48/96 (50%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
TL HN ++ + + ++ S+S DKT+ + + P + GH + ISDV
Sbjct: 19 TLTSHNRAVSSVKFSSD-GRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDV 77
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
SSD + +S S DKTL+LWD+ G + HT
Sbjct: 78 AFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHT 113
Score = 52.8 bits (121), Expect = 1e-07
Identities = 32/93 (34%), Positives = 51/93 (54%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH I+ +A + I+S+S DKTL +W + ET G K L GH+++ V +
Sbjct: 69 GHENGISDVAFSSD-ARFIVSASDDKTLKLWDV---ET--GSLIKTLIGHTNYAFCVNFN 122
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
N +SGS+D+T+R+WD+ GK + H+
Sbjct: 123 PQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHS 155
Score = 36.7 bits (81), Expect = 0.010
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +2
Query: 53 TLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHS 232
T K L H+ +T + N + +I+SSS D +W ++ G K L
Sbjct: 144 TGKCLKVLPAHSDPVTAVDFN-RDGSLIVSSSYDGLCRIW-----DSGTGHCVKTLIDDE 197
Query: 233 HF-ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ +S V S +G + L G+ D TLRLW++++ K + + H
Sbjct: 198 NPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGH 239
Score = 36.7 bits (81), Expect = 0.010
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
I+S S D + +W+L + L QK L GH+ + +V N SGS DKT+R+W
Sbjct: 258 IVSGSEDNCVHMWELNSKK----LLQK-LEGHTETVMNVACHPTENLIASGSLDKTVRIW 312
Score = 34.3 bits (75), Expect = 0.055
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH---SHFISDVVLSSDGNYALSGSWDKTL 304
IL + D TL +W ++ + K GH + IS ++G +SGS D +
Sbjct: 213 ILVGTLDNTLRLWNISSAKF-----LKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCV 267
Query: 305 RLWDLAAGKTTRRFEDHTKV*QN 373
+W+L + K ++ E HT+ N
Sbjct: 268 HMWELNSKKLLQKLEGHTETVMN 290
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 57.6 bits (133), Expect = 5e-09
Identities = 31/95 (32%), Positives = 52/95 (54%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH + + NP +I S S D+ + +W++ D N+ + L GH + I D+
Sbjct: 49 LSGHPSAVYTMKFNPA-GTLIASGSHDREIFLWRVHGDCKNFMV----LKGHKNAILDLH 103
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
+SDG+ +S S DKT+R WD+ GK ++ +H+
Sbjct: 104 WTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHS 138
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
TL GH IT ++ +P +L++ D L VW + R K GH H
Sbjct: 217 TLEGHQDTITGMSLSPD-GSYLLTNGMDNKLCVWDM-RPYAPQNRCVKIFEGHQHNFEKN 274
Query: 251 VL----SSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
+L S DG +GS D+ + +WD + +T + HT
Sbjct: 275 LLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHT 314
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/102 (24%), Positives = 43/102 (42%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
ET K + H+ ++ + P +I+S S D T +W + + P K
Sbjct: 126 ETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDK----- 180
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ I+ V S + +G D +++WDL G+ T E H
Sbjct: 181 -YQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGH 221
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 128 DMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLR 307
D I + D + VW L + E L GH I+ + LS DG+Y L+ D L
Sbjct: 193 DKIFTGGVDNDVKVWDLRKGEATMTLE-----GHQDTITGMSLSPDGSYLLTNGMDNKLC 247
Query: 308 LWDL 319
+WD+
Sbjct: 248 VWDM 251
Score = 35.9 bits (79), Expect = 0.018
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGN-YALSGSWDKTLRL 310
I+S+S DKT+ W + ET G K++ HS F++ + G +SGS D T +L
Sbjct: 111 IVSASPDKTVRAWDV---ET--GKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKL 165
Query: 311 WDLAAGKTTRRFEDHTKV 364
WD+ + F D ++
Sbjct: 166 WDMRQRGAIQTFPDKYQI 183
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 56.8 bits (131), Expect = 9e-09
Identities = 33/96 (34%), Positives = 51/96 (53%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L HNG I + +P + +SS DKT+ +W + + L +K L GH ++ D V
Sbjct: 207 LQAHNGHILKCLLSPANKYLATASS-DKTVKIWNVD----GFKL-EKVLTGHQRWVWDCV 260
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
S DG + ++ S D T RLW + AGK + ++ H K
Sbjct: 261 FSVDGEFLVTASSDMTARLWSMPAGKEVKVYQGHHK 296
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGL--PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTL 304
M+++++ T VW+L R + P +L H+ I +LS Y + S DKT+
Sbjct: 176 MVVAANNRGTCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSPANKYLATASSDKTV 235
Query: 305 RLWDLAAGKTTRRFEDHTK 361
++W++ K + H +
Sbjct: 236 KIWNVDGFKLEKVLTGHQR 254
Score = 30.7 bits (66), Expect = 0.68
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
H++ + V D + SGS D T+++WDL A + +E
Sbjct: 77 HTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYE 117
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 55.2 bits (127), Expect = 3e-08
Identities = 35/82 (42%), Positives = 47/82 (57%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
TL GH I+ + + +++ S+S DKT+I+W T NY L R GHS ISD+
Sbjct: 38 TLEGHTAAISCVKFSND-GNLLASASVDKTMILWSAT----NYSLIH-RYEGHSSGISDL 91
Query: 251 VLSSDGNYALSGSWDKTLRLWD 316
SSD +Y S S D TLR+WD
Sbjct: 92 AWSSDSHYTCSASDDCTLRIWD 113
Score = 48.4 bits (110), Expect = 3e-06
Identities = 30/101 (29%), Positives = 52/101 (51%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH+ I+ +A + S+S D TL +W D + K L GH++F+ V +
Sbjct: 83 GHSSGISDLAWSSD-SHYTCSASDDCTLRIW----DARSPYECLKVLRGHTNFVFCVNFN 137
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV*QNFYF 382
N +SGS+D+T+R+W++ GK R + H+ + +F
Sbjct: 138 PPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHF 178
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/93 (29%), Positives = 45/93 (48%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH ++ + NP ++I+S S D+T+ +W E G + + HS IS V
Sbjct: 124 LRGHTNFVFCVNFNPP-SNLIVSGSFDETIRIW-----EVKTGKCVRMIKAHSMPISSVH 177
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED 352
+ DG+ +S S D + ++WD G + D
Sbjct: 178 FNRDGSLIVSASHDGSCKIWDAKEGTCLKTLID 210
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
K L GH+ IS V S+DGN S S DKT+ LW R+E H+
Sbjct: 37 KTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEGHS 85
Score = 35.5 bits (78), Expect = 0.024
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSH---FISDVVLSSDGNYALSGSWDKTL 304
IL ++ D TL KL+ T L K GH++ I+ ++G Y +SGS D +
Sbjct: 228 ILVATLDSTL---KLSNYATGKFL--KVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCV 282
Query: 305 RLWDLAAGKTTRRFEDHT 358
LWDL A +R E HT
Sbjct: 283 YLWDLQARNILQRLEGHT 300
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 54.4 bits (125), Expect = 5e-08
Identities = 26/77 (33%), Positives = 43/77 (55%)
Frame = +2
Query: 125 PDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTL 304
P+ ++S S D T+ +W+ + + P+KRL GH ++ V S DG + S S+DK++
Sbjct: 329 PERLVSGSDDFTMFLWEPSVSKQ----PKKRLTGHQQLVNHVYFSPDGKWIASASFDKSV 384
Query: 305 RLWDLAAGKTTRRFEDH 355
RLW+ G+ F H
Sbjct: 385 RLWNGITGQFVTVFRGH 401
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH G + Q++ + ++LS S+D TL +W++ + LP GH+ + V S
Sbjct: 400 GHVGPVYQVSWSAD-SRLLLSGSKDSTLKIWEIRTKKLKQDLP-----GHADEVFAVDWS 453
Query: 260 SDGNYALSGSWDKTLRLW 313
DG +SG D+ L+LW
Sbjct: 454 PDGEKVVSGGKDRVLKLW 471
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
GH+ + V S DG SGS D T+RLWDL
Sbjct: 107 GHAEAVLCVSFSPDGKQLASGSGDTTVRLWDL 138
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
T GH W+ +A +P ++ S S+ + W + E G P L GH +I+ +
Sbjct: 146 TCKGHKNWVLTVAWSPDGKHLV-SGSKSGEICCWNPKKGELE-GSP---LTGHKKWITGI 200
Query: 251 V-----LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
LSS ++ S D R+WD+ K+ HT
Sbjct: 201 SWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHT 241
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/94 (28%), Positives = 42/94 (44%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH + + +P I S+S DK++ +W T + R GH + V
Sbjct: 356 LTGHQQLVNHVYFSPD-GKWIASASFDKSVRLWN---GITGQFVTVFR--GHVGPVYQVS 409
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
S+D LSGS D TL++W++ K + H
Sbjct: 410 WSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGH 443
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
T+ GH + ++ +P + S S D T+ +W L + P GH +++ V
Sbjct: 104 TIAGHAEAVLCVSFSPD-GKQLASGSGDTTVRLWDLYTET-----PLFTCKGHKNWVLTV 157
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGK 331
S DG + +SGS + W+ G+
Sbjct: 158 AWSPDGKHLVSGSKSGEICCWNPKKGE 184
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYAL-SGSWDKTLR 307
+I + S+D T+ +W ET G + L GH H+I+ + LS++ Y L +G++D T R
Sbjct: 254 IIYTGSQDCTIKMW-----ETTQGKLIRELKGHGHWINSLALSTE--YVLRTGAFDHTGR 306
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 54.4 bits (125), Expect = 5e-08
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +2
Query: 53 TLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHS 232
T+ + L GH G+++ P +++SS D+T I+W +T + GH+
Sbjct: 145 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHT 204
Query: 233 HFISDVVLS-SDGNYALSGSWDKTLRLWDL-AAGKTTRRFEDH 355
+ V +S S+ N+ +SGS D T RLWD AA + R F H
Sbjct: 205 ADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGH 247
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + ++ + P+ +S S D T +W TR + + +GH ++ V
Sbjct: 202 GHTADVLSVSISGSNPNWFISGSCDSTARLWD-TRAASR---AVRTFHGHEGDVNTVKFF 257
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
DG +GS D T RL+D+ G + ++ H
Sbjct: 258 PDGYRFGTGSDDGTCRLYDIRTGHQLQVYQPH 289
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 54.4 bits (125), Expect = 5e-08
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +2
Query: 53 TLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHS 232
T+ + L GH G+++ P +++SS D+T I+W +T + GH+
Sbjct: 83 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHT 142
Query: 233 HFISDVVLS-SDGNYALSGSWDKTLRLWDL-AAGKTTRRFEDH 355
+ V +S S+ N+ +SGS D T RLWD AA + R F H
Sbjct: 143 ADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGH 185
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDET--NYGLPQKRLYGHSHFISDVV 253
G NG +T IA + + + + T VW E + GL Q H + IS +
Sbjct: 230 GENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQD---SHRNRISCLG 286
Query: 254 LSSDGNYALSGSWDKTLRLW 313
LS+DG+ +GSWD L++W
Sbjct: 287 LSADGSALCTGSWDSNLKIW 306
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + ++ + P+ +S S D T +W TR + + +GH ++ V
Sbjct: 140 GHTADVLSVSISGSNPNWFISGSCDSTARLWD-TRAASR---AVRTFHGHEGDVNTVKFF 195
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
DG +GS D T RL+D+ G + ++ H
Sbjct: 196 PDGYRFGTGSDDGTCRLYDIRTGHQLQVYQPH 227
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 54.4 bits (125), Expect = 5e-08
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +2
Query: 53 TLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHS 232
T+ + L GH G+++ P +++SS D+T I+W +T + GH+
Sbjct: 145 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHT 204
Query: 233 HFISDVVLS-SDGNYALSGSWDKTLRLWDL-AAGKTTRRFEDH 355
+ V +S S+ N+ +SGS D T RLWD AA + R F H
Sbjct: 205 ADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGH 247
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDET--NYGLPQKRLYGHSHFISDVV 253
G NG +T IA + + + + T VW E + GL Q H + IS +
Sbjct: 292 GENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQD---SHRNRISCLG 348
Query: 254 LSSDGNYALSGSWDKTLRLW 313
LS+DG+ +GSWD L++W
Sbjct: 349 LSADGSALCTGSWDSNLKIW 368
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + ++ + P+ +S S D T +W TR + + +GH ++ V
Sbjct: 202 GHTADVLSVSISGSNPNWFISGSCDSTARLWD-TRAASR---AVRTFHGHEGDVNTVKFF 257
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
DG +GS D T RL+D+ G + ++ H
Sbjct: 258 PDGYRFGTGSDDGTCRLYDIRTGHQLQVYQPH 289
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 52.8 bits (121), Expect = 1e-07
Identities = 33/96 (34%), Positives = 48/96 (50%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L HN I + +P + +SS DKT+ +W L + L +K L GH ++ D
Sbjct: 213 LQAHNSHILKCLLSPGNKYLATASS-DKTVKIWNLD----GFKL-EKVLTGHERWVWDCD 266
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
S DG Y ++ S D T RLW + AGK ++ H K
Sbjct: 267 FSMDGEYLVTASSDTTARLWSMRAGKEEMVYQAHRK 302
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 131 MILSSSRDKTLIVWK--LTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTL 304
M+++++ T VW+ R P +L H+ I +LS Y + S DKT+
Sbjct: 182 MVVAANDRGTCYVWRSLCERQTMTEFEPLHKLQAHNSHILKCLLSPGNKYLATASSDKTV 241
Query: 305 RLWDLAAGKTTRRFEDHTK 361
++W+L K + H +
Sbjct: 242 KIWNLDGFKLEKVLTGHER 260
Score = 30.7 bits (66), Expect = 0.68
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 194 NYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV 364
N +P + H+ + V G+ SGS D ++++WDL + R F + V
Sbjct: 72 NPHIPVRNFVSHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQREFRSVSPV 128
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 52.8 bits (121), Expect = 1e-07
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +2
Query: 32 GFIKM--SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 205
G IK+ E K+ GH + + +P + + + S S D L VW D G
Sbjct: 29 GVIKLWDLEESKMVRAFTGHRSNCSAVEFHP-FGEFLASGSSDTNLRVW----DTRKKGC 83
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
Q GH+ IS + S DG + +SG D +++WDL AGK F+ H
Sbjct: 84 IQT-YKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKCH 132
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/97 (24%), Positives = 42/97 (43%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
+LCGH + +A N + ++L+ + + +W L + + GH S V
Sbjct: 2 SLCGHTSPVDSVAFNSEEV-LVLAGASSGVIKLWDLEESKM-----VRAFTGHRSNCSAV 55
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
G + SGS D LR+WD + ++ HT+
Sbjct: 56 EFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTR 92
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/93 (30%), Positives = 45/93 (48%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH+ ++ Q+ NPK + S+S D+T+ +W L + N+ L L G + D
Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHLKGVN--CVDYFTG 196
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
D Y ++GS D T ++WD + E HT
Sbjct: 197 GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229
Score = 44.0 bits (99), Expect = 7e-05
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS- 259
H +I +A +P P +LSSS D + +W D L + GHSH++ V +
Sbjct: 98 HADYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWEKGWLCTQIFEGHSHYVMQVTFNP 152
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
D N S S D+T+++W+L + + H K
Sbjct: 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLK 186
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+++ S D T VW D Q L GH+H +S V + ++GS D T+R+W
Sbjct: 202 LITGSDDHTAKVW----DYQTKSCVQT-LEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 52.0 bits (119), Expect = 3e-07
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +2
Query: 32 GFIKM--SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 205
G IK+ E K+ GH + + +P + + + S S D L +W + + G
Sbjct: 80 GVIKLWDVEEAKMVRAFTGHRSNCSAVEFHP-FGEFLASGSSDANLKIWDIRKK----GC 134
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
Q GHS IS + + DG + +SG D +++WDL AGK F+ H
Sbjct: 135 IQT-YKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKFH 183
Score = 33.5 bits (73), Expect = 0.097
Identities = 20/97 (20%), Positives = 42/97 (43%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
+LCGH + +A + ++L+ + + +W + + + GH S V
Sbjct: 53 SLCGHTSAVDSVAFDSAEV-LVLAGASSGVIKLWDVEEAKM-----VRAFTGHRSNCSAV 106
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
G + SGS D L++WD+ + ++ H++
Sbjct: 107 EFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSR 143
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/96 (28%), Positives = 46/96 (47%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
+L T GH ++ I PK ++LS+ D + +W D N G + GH+
Sbjct: 273 RLVHTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIW----DVYNSGKCMRTYMGHAKA 328
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 346
+ D+ S+DG+ L+ +DK ++ WD G+ F
Sbjct: 329 VRDICFSNDGSKFLTAGYDKNIKYWDTETGQVISTF 364
Score = 30.7 bits (66), Expect = 0.68
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH--SHFISDVVL 256
H + I+ +P + + + S D ++++ TR+ +KR GH + + V
Sbjct: 454 HMHSMPSISVHPN-GNWLAAQSLDNQILIYS-TRERFQLN-KKKRFAGHIVAGYACQVNF 510
Query: 257 SSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV 364
S DG + +SG + WD + K R + H V
Sbjct: 511 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHNGV 546
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/75 (17%), Positives = 34/75 (45%)
Frame = +2
Query: 92 WITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGN 271
++ ++ + +++L+ DK ++ W + E Q H ++ + +
Sbjct: 371 YVVKLNPDDDKQNILLAGMSDKKIVQWDINTGEVTQEYDQ-----HLGAVNTITFVDNNR 425
Query: 272 YALSGSWDKTLRLWD 316
++ S DK+LR+W+
Sbjct: 426 RFVTSSDDKSLRVWE 440
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFIS--DVV 253
GH+ ++ Q+ NPK + S+S D+T+ +W L + N+ L H ++ D
Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVDYF 194
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
D Y ++GS D T ++WD + E HT
Sbjct: 195 TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS- 259
H+ +I +A +P P +LSSS D + +W E + Q GHSH++ V +
Sbjct: 98 HSDYIRCVAVHPTLP-YVLSSSDDMLIKLWDW---EKGWACTQI-FEGHSHYVMQVTFNP 152
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
D N S S D+T+++W+L + + H K
Sbjct: 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+++ S D T VW D Q L GH+H +S V + ++GS D T+R+W
Sbjct: 202 LITGSDDHTAKVW----DYQTKSCVQT-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFIS--DVV 253
GH+ ++ Q+ NPK + S+S D+T+ +W L + N+ L H ++ D
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVDYF 194
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
D Y ++GS D T ++WD + + HT
Sbjct: 195 TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Score = 47.2 bits (107), Expect = 7e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS- 259
H+ +I +A +P P +LSSS D + +W D N + GHSH++ VV +
Sbjct: 98 HSDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWENGWACTQIFEGHSHYVMQVVFNP 152
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
D N S S D+T+++W+L + + H K
Sbjct: 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+++ S D T VW D Q L GH+H +S V + ++GS D T+R+W
Sbjct: 202 LITGSDDHTAKVW----DYQTKSCVQT-LDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFIS--DVV 253
GH+ ++ Q+ NPK + S+S D+T+ +W L + N+ L H ++ D
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVDYF 194
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
D Y ++GS D T ++WD + + HT
Sbjct: 195 TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Score = 47.2 bits (107), Expect = 7e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS- 259
H+ +I +A +P P +LSSS D + +W D N + GHSH++ VV +
Sbjct: 98 HSDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWENGWACTQIFEGHSHYVMQVVFNP 152
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
D N S S D+T+++W+L + + H K
Sbjct: 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+++ S D T VW D Q L GH+H +S V + ++GS D T+R+W
Sbjct: 202 LITGSDDHTAKVW----DYQTKSCVQT-LDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFIS--DVV 253
GH+ ++ Q+ NPK + S+S D+T+ +W L + N+ L H ++ D
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVDYF 194
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
D Y ++GS D T ++WD + + HT
Sbjct: 195 TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Score = 47.2 bits (107), Expect = 7e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS- 259
H+ +I +A +P P +LSSS D + +W D N + GHSH++ VV +
Sbjct: 98 HSDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWENGWACTQIFEGHSHYVMQVVFNP 152
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
D N S S D+T+++W+L + + H K
Sbjct: 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+++ S D T VW D Q L GH+H +S V + ++GS D T+R+W
Sbjct: 202 LITGSDDHTAKVW----DYQTKSCVQT-LDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH GW+ +A +P + + S D+T+ +W + G+ + L GH + + +S
Sbjct: 174 GHLGWVRSVAFDPSN-EWFCTGSADRTIKIWDVAT-----GVLKLTLTGHIEQVRGLAVS 227
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ Y S DK ++ WDL K R + H
Sbjct: 228 NRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH 259
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/94 (27%), Positives = 40/94 (42%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + +A +P D++L+ RD VW + + L GH + + V
Sbjct: 258 GHLSGVYCLALHPTL-DVLLTGGRDSVCRVWDIRTKMQIFALS-----GHDNTVCSVFTR 311
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
++GS D T++ WDL GKT H K
Sbjct: 312 PTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKK 345
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAG 328
+ GH ++ V + +GS D+T+++WD+A G
Sbjct: 172 IQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATG 208
Score = 30.7 bits (66), Expect = 0.68
Identities = 21/76 (27%), Positives = 30/76 (39%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH+ + + T P P +++ S D T+ W L YG L H + +
Sbjct: 298 LSGHDNTVCSVFTRPTDP-QVVTGSHDTTIKFWDL-----RYGKTMSTLTHHKKSVRAMT 351
Query: 254 LSSDGNYALSGSWDKT 301
L N S S D T
Sbjct: 352 LHPKENAFASASADNT 367
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +2
Query: 62 LRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFI 241
L+ TL GH + +A + ++ M S+ DK + W L +++ + +GH +
Sbjct: 210 LKLTLTGHIEQVRGLAVSNRHTYMF-SAGDDKQVKCWDLEQNKVI-----RSYHGHLSGV 263
Query: 242 SDVVLSSDGNYALSGSWDKTLRLWDL 319
+ L + L+G D R+WD+
Sbjct: 264 YCLALHPTLDVLLTGGRDSVCRVWDI 289
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/93 (31%), Positives = 44/93 (47%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + +A N M++S +K L VW + G +L GH+ + ++L
Sbjct: 211 GHKESVYALAMNDT-GTMLVSGGTEKVLRVW-----DPRTGSKSMKLRGHTDNVRVLLLD 264
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
S G + LSGS D +RLWDL + + HT
Sbjct: 265 STGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHT 297
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/93 (31%), Positives = 44/93 (47%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + +A N M++S +K L VW + G +L GH+ + ++L
Sbjct: 211 GHKESVYALAMNDT-GTMLVSGGTEKVLRVW-----DPRTGSKSMKLRGHTDNVRVLLLD 264
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
S G + LSGS D +RLWDL + + HT
Sbjct: 265 STGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHT 297
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 48.8 bits (111), Expect = 2e-06
Identities = 31/92 (33%), Positives = 46/92 (50%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GHN + +P + S S D+T +W + R + P + + GH +SDV
Sbjct: 458 GHNYPVWDAQFSP-FGHYFASCSHDRTARIWSMDRIQ-----PLRIMAGH---LSDVDWH 508
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ NY +GS DKT+RLWD+ G+ R F H
Sbjct: 509 PNCNYIATGSSDKTVRLWDVQTGECVRIFIGH 540
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/82 (32%), Positives = 42/82 (51%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH+G + +P D +LSSS D T+ +W T+ N + GH++ + D
Sbjct: 414 LLGHSGPVYSATFSPP-GDFVLSSSADTTIRLWS-TKLNANLVCYK----GHNYPVWDAQ 467
Query: 254 LSSDGNYALSGSWDKTLRLWDL 319
S G+Y S S D+T R+W +
Sbjct: 468 FSPFGHYFASCSHDRTARIWSM 489
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 89 GWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDG 268
G ++ + +P + I + S DKT+ +W + E + GH + + +S DG
Sbjct: 500 GHLSDVDWHPNC-NYIATGSSDKTVRLWDVQTGEC-----VRIFIGHRSMVLSLAMSPDG 553
Query: 269 NYALSGSWDKTLRLWDLAAGK 331
Y SG D T+ +WDL+ +
Sbjct: 554 RYMASGDEDGTIMMWDLSTAR 574
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + +A +P M S D T+++W L+ L GH+ + + S
Sbjct: 539 GHRSMVLSLAMSPDGRYMA-SGDEDGTIMMWDLSTARCI-----TPLMGHNSCVWSLSYS 592
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFED 352
+G+ SGS D T++LWD+ + + E+
Sbjct: 593 GEGSLLASGSADCTVKLWDVTSSTKLTKAEE 623
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/94 (27%), Positives = 44/94 (46%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH GW+ +A +P + + S D+T+ +W + G+ + L GH + +
Sbjct: 166 LQGHLGWVRSVAFDPSN-EWFCTGSADRTIKIWDVAT-----GVLKLTLTGHIGQVRGLA 219
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+S+ Y S DK ++ WDL K R + H
Sbjct: 220 VSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGH 253
Score = 40.7 bits (91), Expect = 6e-04
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + +A +P D++L+ RD VW + + LP H + V+
Sbjct: 252 GHLHGVYCLALHPTL-DVVLTGGRDSVCRVWDIRTKMQIFVLP------HDSDVFSVLAR 304
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
++GS D T++ WDL GK+ +H K
Sbjct: 305 PTDPQVITGSHDSTIKFWDLRYGKSMATITNHKK 338
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/86 (26%), Positives = 42/86 (48%)
Frame = +2
Query: 62 LRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFI 241
L+ TL GH G + +A + ++ M S+ DK + W L +++ + +GH H +
Sbjct: 204 LKLTLTGHIGQVRGLAVSNRHTYMF-SAGDDKQVKCWDLEQNKVI-----RSYHGHLHGV 257
Query: 242 SDVVLSSDGNYALSGSWDKTLRLWDL 319
+ L + L+G D R+WD+
Sbjct: 258 YCLALHPTLDVVLTGGRDSVCRVWDI 283
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 48.4 bits (110), Expect = 3e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
E K+ TL GH + +P + + S S D L +W + + + GH
Sbjct: 182 EEAKVVRTLTGHRSNCVSVNFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYK-----GH 235
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ ++ + + DG + +SG D +++WDL AGK F+ H
Sbjct: 236 TRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSH 277
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
LYGHS I V + +G+ T++LWDL K R H
Sbjct: 148 LYGHSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGH 193
Score = 32.3 bits (70), Expect = 0.22
Identities = 21/97 (21%), Positives = 40/97 (41%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
+L GH+ I + + ++ + + T+ +W L + + L GH V
Sbjct: 147 SLYGHSSGIDSVTFDAS-EGLVAAGAASGTIKLWDLEEAKV-----VRTLTGHRSNCVSV 200
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
G + SGS D L++WD+ ++ HT+
Sbjct: 201 NFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR 237
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
E K+ TL GH + +P + + S S D L +W + + + GH
Sbjct: 89 EEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYK-----GH 142
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ ++ + + DG + +SG D +++WDL AGK F+ H
Sbjct: 143 TRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSH 184
Score = 34.7 bits (76), Expect = 0.042
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
LYGHS I V + +G+ T++LWDL K R H
Sbjct: 55 LYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGH 100
Score = 31.1 bits (67), Expect = 0.52
Identities = 21/97 (21%), Positives = 40/97 (41%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
+L GH+ I + + ++ + + T+ +W L + + L GH V
Sbjct: 54 SLYGHSSGIDSVTFDASEV-LVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISV 107
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
G + SGS D L++WD+ ++ HT+
Sbjct: 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR 144
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
E K+ TL GH + +P + + S S D L +W + + + GH
Sbjct: 89 EEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYK-----GH 142
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ ++ + + DG + +SG D +++WDL AGK F+ H
Sbjct: 143 TRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSH 184
Score = 34.7 bits (76), Expect = 0.042
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
LYGHS I V + +G+ T++LWDL K R H
Sbjct: 55 LYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGH 100
Score = 31.1 bits (67), Expect = 0.52
Identities = 21/97 (21%), Positives = 40/97 (41%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
+L GH+ I + + ++ + + T+ +W L + + L GH V
Sbjct: 54 SLYGHSSGIDSVTFDASEV-LVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISV 107
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
G + SGS D L++WD+ ++ HT+
Sbjct: 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR 144
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/79 (34%), Positives = 41/79 (51%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 262
H G +T + N K M+ S S+D +I+W + + + RL GH ++D+V
Sbjct: 105 HKGAVTALRYN-KVGSMLASGSKDNDIILWDVVGESGLF-----RLRGHRDQVTDLVFLD 158
Query: 263 DGNYALSGSWDKTLRLWDL 319
G +S S DK LR+WDL
Sbjct: 159 GGKKLVSSSKDKFLRVWDL 177
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAG 328
LYGH + + +SSDG ++GS DK L++W L G
Sbjct: 578 LYGHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFG 614
Score = 32.7 bits (71), Expect = 0.17
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
++LK +L GH + I + ++I++ S+DK L +W L ++G K ++ H
Sbjct: 570 DSLKFYLSLYGHKLPVMCIDISSD-GELIVTGSQDKNLKIWGL-----DFGDCHKSIFAH 623
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWD 316
+ V + +Y S D+ ++ WD
Sbjct: 624 GDSVMGVKFVRNTHYLFSIGKDRLVKYWD 652
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
L GH I + +S+ G++ ++GS D+++R WD
Sbjct: 662 LEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWD 694
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +2
Query: 68 GTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISD 247
G + GH ++ +A NP Y I S+S D + +W ++ T P GH +
Sbjct: 50 GAMDGHRDGVSCMAKNPNYLKGIFSASMDGDIRLWDISSRRTVCQFP-----GHQGAVRG 104
Query: 248 VVLSSDGNYALSGSWDKTLRLWDL 319
+ S+DGN +S D T+RLW++
Sbjct: 105 LTASTDGNVLVSCGTDCTVRLWNV 128
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 248 VVLSSDGNYALSGSWDKTLRLWDLAAGK 331
V S D Y +SGS D LRLW A +
Sbjct: 328 VKYSCDATYVISGSDDTNLRLWKAKASE 355
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +2
Query: 128 DMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLR 307
+M+ S S+D + +W++ G+ +R HS ++ + S DG+ LS S+D+T R
Sbjct: 276 EMLASGSQDGKIKIWRIRT-----GVCIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTAR 330
Query: 308 LWDLAAGKTTRRFEDHT 358
+ L +GK + F HT
Sbjct: 331 IHGLKSGKLLKEFRGHT 347
Score = 34.7 bits (76), Expect = 0.042
Identities = 20/78 (25%), Positives = 42/78 (53%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 262
H+ +T ++ + + +LS+S D+T + L G K GH+ +++ + +S
Sbjct: 304 HSQGVTSLSFS-RDGSQLLSTSFDQTARIHGLKS-----GKLLKEFRGHTSYVNHAIFTS 357
Query: 263 DGNYALSGSWDKTLRLWD 316
DG+ ++ S D T+++WD
Sbjct: 358 DGSRIITASSDCTVKVWD 375
Score = 31.9 bits (69), Expect = 0.30
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +2
Query: 134 ILSSSRDKTLIVW-----KLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDK 298
+ SSS D + VW KL +D Y + + H + + S D SGS D
Sbjct: 228 LASSSVDGFIEVWDYISGKLKKD-LQYQADESFMM-HDDPVLCIDFSRDSEMLASGSQDG 285
Query: 299 TLRLWDLAAGKTTRRFEDHTK 361
+++W + G RRF+ H++
Sbjct: 286 KIKIWRIRTGVCIRRFDAHSQ 306
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/101 (27%), Positives = 48/101 (47%)
Frame = +2
Query: 56 LKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSH 235
LK R + H+ I +A + ++ + S D+T +W+L D + L GH
Sbjct: 489 LKTRSVVAAHDKDINSVAV-ARNDSLVCTGSEDRTASIWRLP-DLVHV----VTLKGHKR 542
Query: 236 FISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
I V S+ ++ S DKT+++W ++ G + FE HT
Sbjct: 543 RIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHT 583
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
ETLK + GH G + +A + ++ ++ D+ ++VW + + G GH
Sbjct: 90 ETLKCIRSWKGHEGPVMGMACHAS-GGLLATAGADRKVLVW-----DVDGGFCTHYFRGH 143
Query: 230 SHFISDVVLSSDGN--YALSGSWDKTLRLWDLAAGKTTRR 343
+S ++ D N +SGS D T+R+WDL A T ++
Sbjct: 144 KGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNTEKK 183
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 80 GHNGWITQIATNP-KYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVL 256
GH G ++ I +P ++++S S D T+ VW L T + H ++ + L
Sbjct: 142 GHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNTEKKC-LAIMEKHFSAVTSIAL 200
Query: 257 SSDGNYALSGSWDKTLRLWDL 319
S DG S DK + LWDL
Sbjct: 201 SEDGLTLFSAGRDKVVNLWDL 221
Score = 39.1 bits (87), Expect = 0.002
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +2
Query: 68 GTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL---TRD-ETNYGLPQKRLY-GHS 232
G GHNG I +A K +S S D+TL VW L + D E L + + H
Sbjct: 440 GVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGISEDSEEPINLKTRSVVAAHD 499
Query: 233 HFISDVVLSSDGNYALSGSWDKTLRLWDL 319
I+ V ++ + + +GS D+T +W L
Sbjct: 500 KDINSVAVARNDSLVCTGSEDRTASIWRL 528
Score = 33.1 bits (72), Expect = 0.13
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +2
Query: 53 TLKLRGTLCGHNGWITQIAT--NPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYG 226
T+ L GH + + T + +I++ S+DKT+ +W T ++ G+ G
Sbjct: 390 TMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNAT-SKSCIGVGT----G 444
Query: 227 HSHFISDVVLSSDG-NYALSGSWDKTLRLWDL 319
H+ I V + ++ +SGS D+TL++W L
Sbjct: 445 HNGDILAVAFAKKSFSFFVSGSGDRTLKVWSL 476
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/95 (23%), Positives = 42/95 (44%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
TL GH I + + ++++S DKT+ +W ++ G K GH+ +
Sbjct: 536 TLKGHKRRIFSVEFST-VDQCVMTASGDKTVKIWAISD-----GSCLKTFEGHTSSVLRA 589
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+DG +S D L+LW++ + ++ H
Sbjct: 590 SFITDGTQFVSCGADGLLKLWNVNTSECIATYDQH 624
Score = 31.9 bits (69), Expect = 0.30
Identities = 23/107 (21%), Positives = 46/107 (42%)
Frame = +2
Query: 62 LRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFI 241
++ T+ G + +T +A +P ++ S+ + + VW L ET + + GH +
Sbjct: 52 VKSTIEGESDTLTALALSPD-DKLLFSAGHSRQIRVWDL---ETLKCIRSWK--GHEGPV 105
Query: 242 SDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV*QNFYF 382
+ + G + D+ + +WD+ G T F H V + F
Sbjct: 106 MGMACHASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILF 152
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/94 (26%), Positives = 47/94 (50%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH GW + +++S +D+ + +W +T G L+GH + + V +
Sbjct: 266 GH-GWDVKSVDWHPTKSLLVSGGKDQLVKLW-----DTRSGRELCSLHGHKNIVLSVKWN 319
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
+GN+ L+ S D+ ++L+D+ K + F HTK
Sbjct: 320 QNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTK 353
Score = 35.5 bits (78), Expect = 0.024
Identities = 21/87 (24%), Positives = 38/87 (43%)
Frame = +2
Query: 53 TLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHS 232
T+K + GH +T +A +P + + +S S D ++ W + + +P H
Sbjct: 341 TMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWIVGHENPQIEIPN----AHD 396
Query: 233 HFISDVVLSSDGNYALSGSWDKTLRLW 313
+ + D+ G SGS D T + W
Sbjct: 397 NSVWDLAWHPIGYLLCSGSNDHTTKFW 423
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 46.0 bits (104), Expect = 2e-05
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH G I ++ + K +LSSS D+T+ +W++ DE R + H++F++ V +
Sbjct: 320 GHIGEILDLSWSEK--GYLLSSSVDETVRLWRVGCDEC------LRTFTHNNFVTCVAFN 371
Query: 260 S-DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV 364
D NY +SGS D +R+WD+ T R D+T +
Sbjct: 372 PVDDNYFISGSIDGKVRIWDV----TRCRVVDYTDI 403
Score = 31.9 bits (69), Expect = 0.30
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +2
Query: 137 LSSSRDKTLIVWKLTRDETNYGLPQKRLY---GHSHFISDVVLSSDGNYALSGSWDKTLR 307
L S D T +V T + + +K L+ GH I D+ S G Y LS S D+T+R
Sbjct: 292 LRKSSDSTCVVLP----PTIFSISEKPLHEFKGHIGEILDLSWSEKG-YLLSSSVDETVR 346
Query: 308 LWDLAAGKTTRRF 346
LW + + R F
Sbjct: 347 LWRVGCDECLRTF 359
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 46.0 bits (104), Expect = 2e-05
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH G I ++ + K +LSSS D+T+ +W++ DE R + H++F++ V +
Sbjct: 320 GHIGEILDLSWSEK--GYLLSSSVDETVRLWRVGCDEC------LRTFTHNNFVTCVAFN 371
Query: 260 S-DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV 364
D NY +SGS D +R+WD+ T R D+T +
Sbjct: 372 PVDDNYFISGSIDGKVRIWDV----TRCRVVDYTDI 403
Score = 31.9 bits (69), Expect = 0.30
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +2
Query: 137 LSSSRDKTLIVWKLTRDETNYGLPQKRLY---GHSHFISDVVLSSDGNYALSGSWDKTLR 307
L S D T +V T + + +K L+ GH I D+ S G Y LS S D+T+R
Sbjct: 292 LRKSSDSTCVVLP----PTIFSISEKPLHEFKGHIGEILDLSWSEKG-YLLSSSVDETVR 346
Query: 308 LWDLAAGKTTRRF 346
LW + + R F
Sbjct: 347 LWRVGCDECLRTF 359
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 45.6 bits (103), Expect = 2e-05
Identities = 26/85 (30%), Positives = 46/85 (54%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
TL GH +I + + +YP I+S+S D+T+ +W + T + L GH+H++
Sbjct: 88 TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNW-QSRTCVSV----LTGHNHYVMCA 141
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAA 325
+ +S S D+T+R+WD+ A
Sbjct: 142 SFHPKEDLVVSASLDQTVRVWDIGA 166
Score = 40.3 bits (90), Expect = 8e-04
Identities = 23/79 (29%), Positives = 44/79 (55%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH+ + A +P P +I+S + D+ + +W++ +ET L GH + +S V+
Sbjct: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRM--NETK-AWEVDTLRGHMNNVSSVMFH 257
Query: 260 SDGNYALSGSWDKTLRLWD 316
+ + +S S DK++R+WD
Sbjct: 258 AKQDIIVSNSEDKSIRVWD 276
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 41 KMSETLKLR-GTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 184
+M+ET TL GH ++ + + K D+I+S+S DK++ VW T+
Sbjct: 232 RMNETKAWEVDTLRGHMNNVSSVMFHAKQ-DIIVSNSEDKSIRVWDATK 279
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH G I ++ + K +LSSS D+T+ +W++ + R++ H F++ V +
Sbjct: 361 GHTGEILDLSWSEK--GFLLSSSVDETVRLWRVGSSDECI-----RVFSHKSFVTCVAFN 413
Query: 260 S-DGNYALSGSWDKTLRLWDLA 322
D NY +SGS D +R+WD++
Sbjct: 414 PVDDNYFISGSIDGKVRIWDVS 435
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
PQ GH+ I D+ S G + LS S D+T+RLW + + R H
Sbjct: 355 PQHEFRGHTGEILDLSWSEKG-FLLSSSVDETVRLWRVGSSDECIRVFSH 403
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +2
Query: 128 DMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLR 307
D++ + ++D +++ W+ TN P L GH+ ++ V L N SGS DKT++
Sbjct: 241 DLLFAGTQDGSILAWRYNA-ATNCFEPSASLTGHT--LAVVTLYVGANRLYSGSMDKTIK 297
Query: 308 LWDLAAGKTTRRFEDHTKV*QNFYFW 385
+W L + + DH+ V + W
Sbjct: 298 VWSLDNLQCIQTLTDHSSVVMSLICW 323
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 215 RLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTT 337
+L GH +S + L S + +GS D+TLR+WD A+G+ T
Sbjct: 146 QLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCT 186
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 172
E+ L L GH ++ IA P D + + S+D+TL VW
Sbjct: 139 ESFALLTQLDGHEKLVSGIAL-PSGSDKLYTGSKDETLRVW 178
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/86 (29%), Positives = 45/86 (52%)
Frame = +2
Query: 92 WITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGN 271
W Q + N KY + SSS+D+T I+W+++ D + L + L GH + ++ S D
Sbjct: 278 WFLQFSHNGKY---LASSSKDQTAIIWEISADG-HISL-KHTLVGHHKPVIAILWSPDDR 332
Query: 272 YALSGSWDKTLRLWDLAAGKTTRRFE 349
L+ ++ +R WD+ +G +E
Sbjct: 333 QVLTCGAEEVIRRWDVDSGDCVHMYE 358
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 35 FIKMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 184
+I T KL L GH G + ++ +P M+ S+S D T+ +W L R
Sbjct: 514 YIWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGLDR 563
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 122 YPDM--ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWD 295
YPD I++ D+++ +W L E Q+ + +SD+ ++ DG + +S D
Sbjct: 370 YPDGQGIIAGMTDRSICMWDLDGREKECWKGQR-----TQKVSDIAMTDDGKWLVSVCKD 424
Query: 296 KTLRLWDLAA 325
+ L+D A
Sbjct: 425 SVISLFDREA 434
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 44.4 bits (100), Expect = 5e-05
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +2
Query: 80 GHNGWITQIA---TNPKYPDMILSSSRDKTLIVWKL----TRDETNYGLPQKRLYGHSHF 238
GH+G I+ +A +N + ++S+D+TL ++K + D T K L GH
Sbjct: 148 GHSGAISSVALVNSNDAETVTVATASKDRTLRLFKFDPAESVDSTTKVRAYKILRGHKAS 207
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWD 316
+ V GN S SWD T+ LW+
Sbjct: 208 VQSVSAQKSGNMVCSSSWDCTINLWN 233
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGK 331
L GH+ +S VV + + S SWD ++R WD+ GK
Sbjct: 268 LVGHTQCVSSVVWP-EHDVIYSSSWDHSVRRWDVETGK 304
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVL-SSDGNYALSGSWDKTLR 307
+I + D L VW + T+ P + HS +IS S + LS S+D +
Sbjct: 327 LIAAGGSDPILRVWDPRKPGTS--APVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIM 384
Query: 308 LWDLAAGKTTR 340
LWDL T+
Sbjct: 385 LWDLRTAVMTK 395
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 44.4 bits (100), Expect = 5e-05
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +2
Query: 80 GHNGWITQIA---TNPKYPDMILSSSRDKTLIVWKL----TRDETNYGLPQKRLYGHSHF 238
GH+G I+ +A +N + ++S+D+TL ++K + D T K L GH
Sbjct: 148 GHSGAISSVALVNSNDAETVTVATASKDRTLRLFKFDPAESVDSTTKVRAYKILRGHKAS 207
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWD 316
+ V GN S SWD T+ LW+
Sbjct: 208 VQSVSAQKSGNMVCSSSWDCTINLWN 233
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGK 331
L GH+ +S VV + + S SWD ++R WD+ GK
Sbjct: 268 LVGHTQCVSSVVWP-EHDVIYSSSWDHSVRRWDVETGK 304
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVL-SSDGNYALSGSWDKTLR 307
+I + D L VW + T+ P + HS +IS S + LS S+D +
Sbjct: 327 LIAAGGSDPILRVWDPRKPGTS--APVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIM 384
Query: 308 LWDL 319
LWDL
Sbjct: 385 LWDL 388
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 43.6 bits (98), Expect = 9e-05
Identities = 28/90 (31%), Positives = 47/90 (52%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
++ TL GH+ +T I D++L++S DKT+ +W + D NY + L HS
Sbjct: 255 QILSTLTGHSKKVTSIKFVGD-TDLVLTASSDKTVRIWGCSED-GNY-TSRHTLKDHSAE 311
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAG 328
+ V + + Y +S S D T +DL++G
Sbjct: 312 VRAVTVHATNKYFVSASLDSTWCFYDLSSG 341
Score = 31.1 bits (67), Expect = 0.52
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAA-GKTTRR--FEDHT 358
L GHS ++ + D + L+ S DKT+R+W + G T R +DH+
Sbjct: 260 LTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHS 309
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +2
Query: 41 KMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLP-QKR 217
K ++ + +L H + I +P +++ S + L +WKL ETN K
Sbjct: 49 KKVPSVSYQSSLTYHGCAVNTIRFSPS-GELLASGADGGELFIWKLHPSETNQSWKVHKS 107
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
L H + D+ S D Y +SGS D + +WD+ G + + H
Sbjct: 108 LSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAH 153
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/89 (23%), Positives = 40/89 (44%)
Frame = +2
Query: 47 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYG 226
+++ K+ +L H + + +P ++S S D + I+W + N G + L
Sbjct: 99 NQSWKVHKSLSFHRKDVLDLQWSPD-DAYLISGSVDNSCIIW-----DVNKGSVHQILDA 152
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLW 313
H H++ V Y S S D+T R++
Sbjct: 153 HCHYVQGVAWDPLAKYVASLSSDRTCRIY 181
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +2
Query: 41 KMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLP-QKR 217
K ++ + +L H + I +P +++ S + L +WKL ETN K
Sbjct: 49 KKVPSVSYQSSLTYHGCAVNTIRFSPS-GELLASGADGGELFIWKLHPSETNQSWKVHKS 107
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
L H + D+ S D Y +SGS D + +WD+ G + + H
Sbjct: 108 LSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQILDAH 153
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/89 (23%), Positives = 40/89 (44%)
Frame = +2
Query: 47 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYG 226
+++ K+ +L H + + +P ++S S D + I+W + N G + L
Sbjct: 99 NQSWKVHKSLSFHRKDVLDLQWSPD-DAYLISGSVDNSCIIW-----DVNKGSVHQILDA 152
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLW 313
H H++ V Y S S D+T R++
Sbjct: 153 HCHYVQGVAWDPLAKYVASLSSDRTCRIY 181
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/101 (28%), Positives = 49/101 (48%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
++ TL GH+ +T + D++L++S DKT+ +W+ D NY L HS
Sbjct: 255 QILSTLTGHSKKVTSVKFVGD-SDLVLTASADKTVRIWRNPGD-GNYACGY-TLNDHSAE 311
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
+ V + Y +S S D T +DL++G + D +K
Sbjct: 312 VRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSK 352
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/101 (28%), Positives = 49/101 (48%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
++ TL GH+ +T + D++L++S DKT+ +W+ D NY L HS
Sbjct: 255 QILSTLTGHSKKVTSVKFVGD-SDLVLTASADKTVRIWRNPGD-GNYACGY-TLNDHSAE 311
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
+ V + Y +S S D T +DL++G + D +K
Sbjct: 312 VRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSK 352
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/97 (28%), Positives = 43/97 (44%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
T GH + ++A +P + ++S DKT +W + N G GHS + +
Sbjct: 334 TFEGHLDRLARVAFHPS-GKYLGTTSYDKTWRLWDI-----NTGAELLLQEGHSRSVYGI 387
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
DG A S D R+WDL G++ F+ H K
Sbjct: 388 AFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIK 424
Score = 31.9 bits (69), Expect = 0.30
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 262
H ++Q+ P+ + ++S D + +W RD + L K L GH ++ + +++
Sbjct: 464 HANLVSQVKYEPQEGYFLATASYDMKVNIWS-GRD---FSLV-KSLAGHESKVASLDITA 518
Query: 263 DGNYALSGSWDKTLRLW 313
D + + S D+T++LW
Sbjct: 519 DSSCIATVSHDRTIKLW 535
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKT 334
GH + V S +G + SG D R+WDL K+
Sbjct: 421 GHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS 457
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS-DGNYALSGSWDKTLR 307
++LSSS DKT+ +W + ET L +L+ H+ +++ + S D NY LSGS D +R
Sbjct: 519 LLLSSSMDKTVRLWDI---ETKTCL---KLFAHNDYVTCIQFSPVDENYFLSGSLDAKIR 572
Query: 308 LWDL 319
+W +
Sbjct: 573 IWSI 576
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
P L GH I D+ S LS S DKT+RLWD+
Sbjct: 498 PVCSLKGHLDAILDLSWSKS-QLLLSSSMDKTVRLWDI 534
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTR 340
K+L GHS ++D SS+ Y S S DKT+R+W+L+ G R
Sbjct: 210 KQLTGHSKDVTDFDFSSNNQYIASSSLDKTIRVWELSRGVCIR 252
Score = 34.3 bits (75), Expect = 0.055
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Frame = +2
Query: 74 LCGHNGWITQI--ATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISD 247
L GH+ +T ++N +Y I SSS DKT+ VW+L+R G+ + +YG S
Sbjct: 212 LTGHSKDVTDFDFSSNNQY---IASSSLDKTIRVWELSR-----GVCIRVIYGISPQYCI 263
Query: 248 VVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR--FED 352
+ N+ +G+ +K L +++ + G+ ++ FED
Sbjct: 264 RFHPVNNNFLSAGNANKELTVFNFSTGRIIKKLLFED 300
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/87 (29%), Positives = 46/87 (52%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
TL GH +I + + + P I+S+S D+T+ +W + T + L GH+H++
Sbjct: 88 TLLGHLDYIRTVQFHHENP-WIVSASDDQTIRIWNW-QSRTCISV----LTGHNHYVMCA 141
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGK 331
+ +S S D+T+R+WD+ A K
Sbjct: 142 SFHPKEDLVVSASLDQTVRVWDIGALK 168
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/79 (27%), Positives = 44/79 (55%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH+ + + +P P +I+S + D+ + +W++ +ET L GH + +S V+
Sbjct: 202 GHDRGVNWASFHPTLP-LIVSGADDRQVKLWRM--NETK-AWEVDTLRGHMNNVSSVMFH 257
Query: 260 SDGNYALSGSWDKTLRLWD 316
+ + +S S DK++R+WD
Sbjct: 258 AKQDIIVSNSEDKSIRVWD 276
Score = 33.5 bits (73), Expect = 0.097
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GHN ++ + +PK D+++S+S D+T+ VW + + P L S SD+
Sbjct: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALKKKSASPADDLMRFSQMNSDLF 189
Query: 254 LSSDG--NYALSG 286
D Y L G
Sbjct: 190 GGVDAIVKYVLEG 202
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 41 KMSETLKLR-GTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 184
+M+ET TL GH ++ + + K D+I+S+S DK++ VW T+
Sbjct: 232 RMNETKAWEVDTLRGHMNNVSSVMFHAKQ-DIIVSNSEDKSIRVWDATK 279
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/99 (29%), Positives = 46/99 (46%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
KL L GHN + + +P P ++ S S D + + +T G + GH+ +
Sbjct: 191 KLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHD-AEGKTLLG----SMSGHTSW 245
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ V S DG +GS D+T+RLWDL + +H
Sbjct: 246 VLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNH 284
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 47 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 178
+E L G++ GH W+ + +P I + S D+T+ +W L
Sbjct: 230 AEGKTLLGSMSGHTSWVLSVDASPD-GGAIATGSSDRTVRLWDL 272
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +2
Query: 98 TQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYA 277
T + P ++L+ S D+T+ +W+ DE + + GHS ++ + G A
Sbjct: 21 TWVPATEDRPALLLTGSLDETVKLWR--PDELDL---VRTNTGHSLGVAALAAHPSGIIA 75
Query: 278 LSGSWDKTLRLWDLAAGKT 334
S S D +R++D+ T
Sbjct: 76 ASSSIDSFVRVFDVDTNAT 94
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
KLR L GH+ + I + I +SSRD+T+ VW L + +K L GH+ F
Sbjct: 11 KLRCELHGHDDDVRGICVCND--ENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSF 68
Query: 239 ISDVV-LSSDGNY----ALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ + + Y +SGS D + +W+L G+ + + H
Sbjct: 69 VGPLAWIPPTDEYPEGRLVSGSMDTFVFVWNLMNGENIQTLKGH 112
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
KLR L GH+ + I + I +SSRD+T+ VW L + +K L GH+ F
Sbjct: 11 KLRCELHGHDDDVRGICVCND--ENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSF 68
Query: 239 ISDVV-LSSDGNY----ALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ + + Y +SGS D + +W+L G+ + + H
Sbjct: 69 VGPLAWIPPTDEYPEGRLVSGSMDTFVFVWNLMNGENIQTLKGH 112
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 128 DMILSSSRDKTLIVWKLTRDETNYGLP-QKRLYGHSHFISDVVLSSDGNYALSGSWDKTL 304
+++ S + L +WKL ETN K L H + D+ S D Y +SGS D +
Sbjct: 18 ELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSC 77
Query: 305 RLWDLAAGKTTRRFEDH 355
+WD+ G + + H
Sbjct: 78 IIWDVNKGSVHQILDAH 94
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/89 (23%), Positives = 40/89 (44%)
Frame = +2
Query: 47 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYG 226
+++ K+ +L H + + +P ++S S D + I+W + N G + L
Sbjct: 40 NQSWKVHKSLSFHRKDVLDLQWSPD-DAYLISGSVDNSCIIW-----DVNKGSVHQILDA 93
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLW 313
H H++ V Y S S D+T R++
Sbjct: 94 HCHYVQGVAWDPLAKYVASLSSDRTCRIY 122
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/100 (23%), Positives = 49/100 (49%)
Frame = +2
Query: 86 NGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSD 265
NG + Q+ + D++ + ++D +++VW+ + + P L GH+ ++ V L
Sbjct: 220 NGPVGQVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCFD-PAASLLGHT--LAVVSLYVG 276
Query: 266 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV*QNFYFW 385
N SG+ D ++++W L + + +HT V + W
Sbjct: 277 ANRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICW 316
Score = 35.1 bits (77), Expect = 0.032
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 215 RLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTT 337
+L GH ++ + L S + + S D+T+R+WD A+G+ T
Sbjct: 139 QLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCT 179
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
T GH G + +A +P ++ + D +WK+ + LP GH +S +
Sbjct: 65 TFTGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELP-----GHKDSVSCL 119
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAG 328
S DG SG D ++++D ++G
Sbjct: 120 AFSYDGQLLASGGLDGVVQIFDASSG 145
Score = 34.3 bits (75), Expect = 0.055
Identities = 25/93 (26%), Positives = 47/93 (50%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GHN +T P +I + S D +LIVW E+ + + + Y H+ ++ + ++
Sbjct: 195 GHNLNVTCGDFTPD-GKLICTGSDDASLIVWNPKTCESIH-IVKGHPY-HTEGLTCLDIN 251
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
S+ + A+SGS D ++ + ++ GK HT
Sbjct: 252 SNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHT 284
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 40.7 bits (91), Expect = 6e-04
Identities = 27/100 (27%), Positives = 46/100 (46%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
++R TL GH + + + ++S++ D+T+ +W L + G + S+
Sbjct: 306 RVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHK-----GYCTNTVLFTSN- 359
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
+ + LS DG SG D LRLWD+ GK H+
Sbjct: 360 CNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHS 399
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+ + +D+ + +W +TN G K LYG I D+ ++ D ++ + L +W
Sbjct: 246 LFTGGQDRAVKMW-----DTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVW 300
Query: 314 DLAAGKTTRRFEDHT 358
D+++G+ HT
Sbjct: 301 DVSSGRVRHTLTGHT 315
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 40.3 bits (90), Expect = 8e-04
Identities = 28/96 (29%), Positives = 45/96 (46%)
Frame = +2
Query: 38 IKMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKR 217
+K L L HN I +A + ++ S D +++VW+ RD+ +
Sbjct: 243 VKKKRKHSLVAILSEHNSGINALALSGTNGSLLHSGGSDGSILVWE--RDDGGDIVVVGM 300
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAA 325
L GH+ + + + SD SGS DKT+RLW +A
Sbjct: 301 LRGHTESVLCLAVVSD--ILCSGSADKTVRLWKCSA 334
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLW 313
H +S + LS DG S SWD+TL++W
Sbjct: 164 HVDAVSGLALSRDGTLLYSVSWDRTLKIW 192
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRD-ETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLR 307
M+ + + +++VWK T D E++ L GHS ++ + G SGS DKT++
Sbjct: 224 MLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVG--GQMLYSGSVDKTIK 281
Query: 308 LWDLAAGKTTRRFEDHTKV*QNFYFW*K 391
+WDL + + HT + W K
Sbjct: 282 MWDLNTLQCIMTLKQHTGTVTSLLCWDK 309
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGK 331
L GH+ + + L + S S D TLR+WD +G+
Sbjct: 127 LEGHNKELKGIALPEGSDKLFSVSIDGTLRVWDCNSGQ 164
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS-DGNYALSGSWDKTLR 307
++LSSS DKT+ +W + ET L +L+ H+ +++ V + D +Y +SGS D +R
Sbjct: 532 LLLSSSMDKTVRLWDI---ETQSCL---KLFAHNDYVTCVQFNPLDEDYFISGSLDAKIR 585
Query: 308 LWDLA 322
+W+++
Sbjct: 586 IWNIS 590
Score = 31.9 bits (69), Expect = 0.30
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 188 ETNYGLPQKRLYGHSHFISDVV-LS-SDGNYALSGSWDKTLRLWDLAAGKTTRRF 346
ET + L K + + + DV+ LS S LS S DKT+RLWD+ + F
Sbjct: 502 ETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLF 556
Score = 30.3 bits (65), Expect = 0.90
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L HN ++T + NP D +S S D + +W ++ + K + ++ V
Sbjct: 555 LFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEM------VTAVC 608
Query: 254 LSSDGNYALSGSWDKTLRLW 313
+ DG A GS + RL+
Sbjct: 609 YTPDGQAAFVGSINGHCRLY 628
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +2
Query: 113 NPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSW 292
NP + S+S D T+ +W + G GH + + S +G Y SGS
Sbjct: 507 NPNKQLTLASASFDSTVKLW-----DAELGKMLCSFNGHREPVYSLAFSPNGEYIASGSL 561
Query: 293 DKTLRLWDLAAGKTTRRF 346
DK++ +W + GK + +
Sbjct: 562 DKSIHIWSIKEGKIVKTY 579
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
H I + + G+Y L+GS D+T +WD+ A + ++FE H+
Sbjct: 364 HKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHS 407
Score = 31.5 bits (68), Expect = 0.39
Identities = 27/99 (27%), Positives = 46/99 (46%)
Frame = +2
Query: 59 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHF 238
+L TL H G I + N K D +L+ S D+T +VW + +E +++ HS
Sbjct: 356 ELISTLSKHKGPIFSLKWNKK-GDYLLTGSVDRTAVVWDVKAEEW-----KQQFEFHSGP 409
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
DV ++ ++A S S D + L + + + F H
Sbjct: 410 TLDVDWRNNVSFATS-STDSMIYLCKIGETRPAKTFTGH 447
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +2
Query: 140 SSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
+SS D + + K+ ET P K GH ++ V G+ S S D T ++W++
Sbjct: 423 TSSTDSMIYLCKI--GETR---PAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNI 477
Query: 320 AAGKTTRRFEDHTK 361
+HTK
Sbjct: 478 KQSTFVHDLREHTK 491
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 39.5 bits (88), Expect = 0.001
Identities = 28/90 (31%), Positives = 45/90 (50%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH +T + N + D++ S ++D T VW E L R GHS + +S
Sbjct: 35 GHERPLTFLRYN-RNGDLLFSCAKDHTPTVWFADNGER---LGTYR--GHSGAVWCCDIS 88
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
D + ++GS D+T +LWD+ +GK F+
Sbjct: 89 RDSSRLITGSADQTAKLWDVKSGKELFTFK 118
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQK-RLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
I+S D + +W ET L Q GH I+ + ++D ++ L+GS DKT +L
Sbjct: 190 IVSGGEDAAIRIWDA---ETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKL 246
Query: 311 WDL 319
WD+
Sbjct: 247 WDM 249
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/94 (26%), Positives = 42/94 (44%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH G + N + L+ +D+T+ +W R G+ K H + DV
Sbjct: 14 LKGHEGAVLAARFNGD-GNYALTCGKDRTIRLWNPHR-----GILIKTYKSHGREVRDVH 67
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
++SD S D+ + WD++ G+ R+F H
Sbjct: 68 VTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGH 101
Score = 33.5 bits (73), Expect = 0.097
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
++ + +S+DGN L+G D TLRL D G+ + ++ H
Sbjct: 187 VNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGH 225
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
++ GH ++ V + + +S +D++LR+WD
Sbjct: 96 RKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWD 130
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH G + I+ + + +LS+S DKT+ +WK+ ++ ++ H+ +++ V +
Sbjct: 326 GHTGEVLDISWSKD--NYLLSASMDKTVRLWKVGSNDC------LGVFAHNSYVTSVQFN 377
Query: 260 S-DGNYALSGSWDKTLRLWDLA 322
+ NY +SGS D +R+W+++
Sbjct: 378 PVNENYFMSGSIDGKVRIWNIS 399
Score = 35.5 bits (78), Expect = 0.024
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 197 YGLPQKRLY---GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAA 325
+ + +K LY GH+ + D+ S D NY LS S DKT+RLW + +
Sbjct: 314 FRIMEKPLYEFRGHTGEVLDISWSKD-NYLLSASMDKTVRLWKVGS 358
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQK-RLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
I+S DK + +W ET L Q GH I+ + ++D ++ L+GS DKT +L
Sbjct: 163 IVSGGEDKVIRIWDA---ETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 311 WDL 319
WD+
Sbjct: 220 WDM 222
Score = 36.7 bits (81), Expect = 0.010
Identities = 26/90 (28%), Positives = 45/90 (50%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH +T + N + D++ S ++D T +W E L R GH+ + +S
Sbjct: 8 GHERPLTFLRYN-REGDLLFSCAKDHTPTLWFADNGER---LGTYR--GHNGAVWCCDVS 61
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
D + ++GS D+T +LWD+ +GK F+
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFK 91
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQK-RLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
I+S DK + +W ET L Q GH I+ + ++D ++ L+GS DKT +L
Sbjct: 163 IVSGGEDKVIRIWDA---ETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 311 WDL 319
WD+
Sbjct: 220 WDM 222
Score = 36.7 bits (81), Expect = 0.010
Identities = 26/90 (28%), Positives = 45/90 (50%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH +T + N + D++ S ++D T +W E L R GH+ + +S
Sbjct: 8 GHERPLTFLRYN-REGDLLFSCAKDHTPTLWFADNGER---LGTYR--GHNGAVWCCDVS 61
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
D + ++GS D+T +LWD+ +GK F+
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFK 91
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQK-RLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
I+S DK + +W ET L Q GH I+ + ++D ++ L+GS DKT +L
Sbjct: 163 IVSGGEDKVIRIWDA---ETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 311 WDL 319
WD+
Sbjct: 220 WDM 222
Score = 36.7 bits (81), Expect = 0.010
Identities = 26/90 (28%), Positives = 45/90 (50%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH +T + N + D++ S ++D T +W E L R GH+ + +S
Sbjct: 8 GHERPLTFLRYN-REGDLLFSCAKDHTPTLWFADNGER---LGTYR--GHNGAVWCCDVS 61
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
D + ++GS D+T +LWD+ +GK F+
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFK 91
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS-DGNYALSGSWDKTLRL 310
+LSSS DKT+ +W L+ +++ HS +++ + + D NY +SGS D +R+
Sbjct: 482 LLSSSMDKTVRLWDLSSKTC------LKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRI 535
Query: 311 WDL 319
W +
Sbjct: 536 WSI 538
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 188 ETNYGLPQKRLYGHSHFISDVV-LS-SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
E +GL +K + + DV+ LS S + LS S DKT+RLWDL++ KT + H+
Sbjct: 451 EAVFGLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSS-KTCLKVFSHS 508
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGK 331
GH+ I+D+ S DG + +S S D +LR+WD+ K
Sbjct: 555 GHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAK 590
Score = 26.2 bits (55), Expect(2) = 0.86
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +2
Query: 197 YGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
+ + +KR Y H + V S +S + L++WD
Sbjct: 463 FDMSEKRRYAHDGEVIGVACDSTNTLMISAGYHGDLKVWD 502
Score = 22.6 bits (46), Expect(2) = 0.86
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 293 DKTLRLWDLAAGKTTRRFEDHT 358
D +RL+D+ K R F HT
Sbjct: 536 DFVIRLYDVVTLKMVREFRGHT 557
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/94 (25%), Positives = 44/94 (46%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
+L GH +T I + + ++ S+ D + VW + ++ + H+ + DV
Sbjct: 155 SLTGHTKAVTAIDWSTSHVHLLASAGLDGAVYVWNVWSNDKK---KVRAFLHHNAPVKDV 211
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED 352
S G LS +D T RL+D+ G T+ F++
Sbjct: 212 KWSKQGLSLLSCGYDCTSRLFDVERGVETQSFKE 245
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 37.9 bits (84), Expect = 0.005
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR---DETNYGL-----PQKRLY-- 223
L H G + Q+ +P + ++ SS D+ L+VW + R ++ L P + L+
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSH 360
Query: 224 -GHSHFISDVVLSSDGNYALSG-SWDKTLRLWDLA 322
GH ISD + D + +S + D +L++W +A
Sbjct: 361 GGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMA 395
Score = 31.9 bits (69), Expect = 0.30
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 86 NGWITQIATNPKYPDMILSSSRDKTLIVWKLTR----DETNYGLPQKRLYGHSHFISDVV 253
+G + + P+ P ++ + + + ++ R +T+ P RL GH +
Sbjct: 117 DGEVNRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECDPDLRLMGHEQEGYGLA 176
Query: 254 LSS-DGNYALSGSWDKTLRLWDLAAGKTTR 340
SS Y LSGS D+ + LWD++A T +
Sbjct: 177 WSSFKEGYLLSGSQDQRICLWDVSATATDK 206
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 262
H + + + ++ILS S D VW R P L GH ++ +
Sbjct: 270 HTSDVNTVCFADESGNLILSGSDDNLCKVWD-RRCFIGRDKPAGVLVGHLEGVTFIDSRG 328
Query: 263 DGNYALSGSWDKTLRLWDL 319
DG Y +S D+T++LWD+
Sbjct: 329 DGRYFISNGKDQTIKLWDI 347
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
G+S I V S+DG ++GS D ++ ++DL A + + R HT
Sbjct: 227 GYSFGIFSVKFSTDGREVVAGSSDDSIYVYDLEANRVSLRTVAHT 271
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +2
Query: 95 ITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNY 274
I+ ++ +PK D+++++S D + W++TR + + K H + DG
Sbjct: 29 ISSLSFSPK-ADILVATSWDCQVRCWEITRSDGSIASEPKVSMSHDQPVLCSAWKDDGTT 87
Query: 275 ALSGSWDKTLRLWDLAAG 328
+G DK ++W L +G
Sbjct: 88 VFTGGCDKQAKMWPLLSG 105
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 37.5 bits (83), Expect = 0.006
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
M+ S+ DK ++W T+ P+ L H+ I+D+ S + S+DKT+R+
Sbjct: 665 MLASAGHDKKAVLWY-----TDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRV 719
Query: 311 WDL-AAGKTTRRFEDHTKV 364
WD G + R F H+ +
Sbjct: 720 WDADNKGYSLRTFMGHSSM 738
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS-DGNYALSGSWDKTLRL 310
+LSSS DKT+ +W L+ +++ HS +++ + + D Y +SGS D +R+
Sbjct: 527 LLSSSMDKTVRLWNLSSQTC------LKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRV 580
Query: 311 WDLAAGKTTRRFEDHTKV 364
W + + ++ H V
Sbjct: 581 WSIPDRQVVDWYDLHEMV 598
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 155 KTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV--LSSDGNYALSGSWDKTLRLWDLAA 325
K+L + + ++ +GL +K + DV+ S + LS S DKT+RLW+L++
Sbjct: 485 KSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSS 543
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +2
Query: 95 ITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNY 274
I+ ++ +P+ D+++++S D + W+++R + K H + DG
Sbjct: 28 ISSLSFSPR-ADILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKDDGTT 86
Query: 275 ALSGSWDKTLRLWDLAAG 328
SG DK ++W L +G
Sbjct: 87 VFSGGCDKQAKMWPLLSG 104
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 269 NYALSGSWDKTLRLWD 316
N +GSWDKTL+ WD
Sbjct: 127 NLLATGSWDKTLKYWD 142
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
H +S + L+ D SGSWDKTL++W L+ K E H
Sbjct: 244 HFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKCLESIEAH 286
Score = 30.7 bits (66), Expect = 0.68
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S S DKTL VW+L+ + + + H ++ VV D + +GS D TL++
Sbjct: 259 LLYSGSWDKTLKVWRLSDSKC-----LESIEAHDDAVNTVVSGFD-DLVFTGSADGTLKV 312
Query: 311 W 313
W
Sbjct: 313 W 313
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 37.1 bits (82), Expect = 0.008
Identities = 25/101 (24%), Positives = 41/101 (40%)
Frame = +2
Query: 89 GWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDG 268
G + Q+ M+ + + +++VWK T E++ L GH H G
Sbjct: 264 GVVGQVHAMTAANGMLFAGTSSGSILVWKATDSESDPFKYLTSLEGH-HSGEVTCFVVGG 322
Query: 269 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV*QNFYFW*K 391
SGS DKT+++WDL + + H + W K
Sbjct: 323 EVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDK 363
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTR 340
L GH + I + L + S S D TL +WD +G+ R
Sbjct: 183 LEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVR 223
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 37.1 bits (82), Expect = 0.008
Identities = 27/102 (26%), Positives = 42/102 (41%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
E K TL GH + + +P M+ S S D T+ +W + G+ L GH
Sbjct: 106 ENWKAVMTLRGHTADVVDLNWSPD-DSMLASGSLDNTVHIWNMRT-----GMCTTVLRGH 159
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+ V G++ S S DKT+ +W + R + H
Sbjct: 160 LSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAHRTDGH 201
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S+ DK + +W + + P++ H+H I+DV + + S+DKT+++
Sbjct: 522 LLASAGHDKKVFIWNMETLQVE-STPEE----HAHIITDVRFRPNSTQLATSSFDKTIKI 576
Query: 311 WD 316
WD
Sbjct: 577 WD 578
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 175
T+ GH I+ +A +P ++ S+S DK++ +WK
Sbjct: 752 TVAGHECVISALAQSPS-TGVVASASHDKSVKIWK 785
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S+ DK + +W + + P++ H+H I+DV + + S+DKT+++
Sbjct: 524 LLASAGHDKKVFIWNMETLQVE-STPEE----HAHIITDVRFRPNSTQLATSSFDKTIKI 578
Query: 311 WD 316
WD
Sbjct: 579 WD 580
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 175
T+ GH I+ +A +P ++ S+S DK++ +WK
Sbjct: 754 TVAGHECVISALAQSPS-TGVVASASHDKSVKIWK 787
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S+ DK + +W + + P++ H+H I+DV + + S+DKT+++
Sbjct: 524 LLASAGHDKKVFIWNMETLQVE-STPEE----HAHIITDVRFRPNSTQLATSSFDKTIKI 578
Query: 311 WD 316
WD
Sbjct: 579 WD 580
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 175
T+ GH I+ +A +P ++ S+S DK++ +WK
Sbjct: 754 TVAGHECVISALAQSPS-TGVVASASHDKSVKIWK 787
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S+ DK + +W + + P++ H+H I+DV + + S+DKT+++
Sbjct: 524 LLASAGHDKKVFIWNMETLQVE-STPEE----HAHIITDVRFRPNSTQLATSSFDKTIKI 578
Query: 311 WD 316
WD
Sbjct: 579 WD 580
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 175
T+ GH I+ +A +P ++ S+S DK++ +WK
Sbjct: 754 TVAGHECVISALAQSPS-TGVVASASHDKSVKIWK 787
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S+ DK + +W + + P++ H+H I+DV + + S+DKT+++
Sbjct: 524 LLASAGHDKKVFIWNMETLQVE-STPEE----HAHIITDVRFRPNSTQLATSSFDKTIKI 578
Query: 311 WD 316
WD
Sbjct: 579 WD 580
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 175
T+ GH I+ +A +P ++ S+S DK++ +WK
Sbjct: 754 TVAGHECVISALAQSPS-TGVVASASHDKSVKIWK 787
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTR 340
GHS ++ VV S + L+GS D T R+WD GK +
Sbjct: 199 GHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVK 237
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+++ S D+ + VW + +T Y L R GH I+D+ +SS+ + S S D +R+W
Sbjct: 260 VITGSDDRLVKVWSM---DTAYCLASCR--GHEGDITDLAVSSNNIFIASASNDCVIRVW 314
Query: 314 DLAAGKTTRRFEDHT 358
L G HT
Sbjct: 315 RLPDGLPVSVLRGHT 329
Score = 33.9 bits (74), Expect = 0.073
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
KRL GH + + +L G Y ++GS D+ +++W +
Sbjct: 239 KRLRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSM 274
Score = 30.3 bits (65), Expect = 0.90
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 74 LCGHNGWITQIATNPK--YPDMILSSSRDKTLIVW 172
L GH G +T IA +P+ P +LSSS D T +W
Sbjct: 325 LRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIW 359
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
T+ GH+ T ++ N P+++ + S+D+T+ +W L+ +E + G FI+
Sbjct: 364 TINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSCIATHNPNAGGLFFIA-- 421
Query: 251 VLSSDGNYALS-GSWDKTLRLWD 316
S D + L+ G L+LWD
Sbjct: 422 -FSPDNPFLLAMGGVMGELKLWD 443
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 269 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
N S S DK +++WD+A G E HTK
Sbjct: 247 NILASASADKKVKVWDVATGTCKITMEHHTK 277
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 206 PQKRLYGHSHFISDVVLS-SDGNYALSGSWDKTLRLWDLA 322
P + GH + V + S N +GS D+T++LWDL+
Sbjct: 361 PSFTINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLS 400
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 36.7 bits (81), Expect = 0.010
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +2
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
P + LYGH+ + D+ S D N LS S DKT+RLW
Sbjct: 264 PFQELYGHTGDVLDLAWS-DSNLLLSASKDKTVRLW 298
Score = 36.7 bits (81), Expect = 0.010
Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH G + +A + +++LS+S+DKT+ +W+ D+ + ++ H+++++ V
Sbjct: 268 LYGHTGDVLDLAWSDS--NLLLSASKDKTVRLWRTGCDQCLH------VFHHNNYVTCVE 319
Query: 254 LS--SDGNYALSGSWDKTLRLWDLA 322
+ + N+A SGS D R+W L+
Sbjct: 320 FNPVNKNNFA-SGSIDGKARIWGLS 343
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 34.7 bits (76), Expect(2) = 0.013
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 221 YGHSHFISDVVLSSDGNYALSGSWDKTLRLW---DLAAGKTTRRFED 352
+ H IS + LS D SGSWDKT ++W DL ++ ED
Sbjct: 208 FRHLDAISCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVESVNAHED 254
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
TL + +T IA + ++ S D T+ W+ + N G+ L GH ++ +
Sbjct: 295 TLLKQDCAVTAIAVDQS-ATLVYCGSSDGTVNFWERENNMKNGGV----LKGHK--LAVL 347
Query: 251 VLSSDGNYALSGSWDKTLRLW 313
L + GN SGS D +R+W
Sbjct: 348 CLVAAGNLMFSGSADLGIRVW 368
Score = 20.6 bits (41), Expect(2) = 0.013
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 128 DMILSSSRDKTLIVWKLTRDETN 196
D I + +D + VWK E+N
Sbjct: 147 DKIFTGHQDGKIRVWKAASKESN 169
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 36.3 bits (80), Expect = 0.014
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 178
E K G L GH G + + ++P D+++S SRD +W L
Sbjct: 158 EENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDL 200
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS-SDGNYALSGSWDKTLRL 310
+L++S D+T+ VW + ++ G+ L GH+ + + ++ + +SGS D L
Sbjct: 143 LLTASGDQTIKVWDVEENKCT-GV----LIGHTGTVKSMCSHPTNSDLLVSGSRDGCFAL 197
Query: 311 WDLAAGKTTRRFE 349
WDL ++ + E
Sbjct: 198 WDLRCKSSSHKEE 210
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
H + I D+ + L+ S D+T+++WD+ K T HT
Sbjct: 127 HYNAIFDISWIKGDSCLLTASGDQTIKVWDVEENKCTGVLIGHT 170
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 236 FISDVVLSSDGNYALSGSWDKTLRLWDL 319
F ++S DG Y LSGS D +W +
Sbjct: 340 FFVRTMISPDGEYVLSGSSDGNAYIWQV 367
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 36.3 bits (80), Expect = 0.014
Identities = 22/58 (37%), Positives = 25/58 (43%)
Frame = +2
Query: 185 DETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
D N P GH +S V S+ A S S D TLRLWD+ R F HT
Sbjct: 534 DLRNISQPLHVFSGHKKAVSYVKFLSNNELA-SASTDSTLRLWDVKDNLPVRTFRGHT 590
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +2
Query: 185 DETNYGLP---QKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
+E Y +P + +L GH+ +S + + S G LSGS+D T+R++D
Sbjct: 159 EENRYQIPLSNEIQLKGHTKIVSSLAVDSAGARVLSGSYDYTVRMYD 205
Score = 33.9 bits (74), Expect = 0.073
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
H+ I+ V SSDG LS S+D +L++WDL
Sbjct: 372 HTDDITSVKFSSDGRILLSRSFDGSLKVWDL 402
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 35.9 bits (79), Expect = 0.018
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQ---KRLYGHSHFIS 244
L GH + + +P D++ S S D T+ VW D+ Y Q + GHS +
Sbjct: 159 LTGHTQDVKMVQWHPTM-DVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGESNNGHSSTVW 217
Query: 245 DVVLSSDGNYALSGSWDKTLRLW 313
+ ++ G+ ++ S D TL++W
Sbjct: 218 SISFNAAGDKMVTCSDDLTLKIW 240
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQK---RLYGHSHFISDVV 253
H + A +P ++ ++S D T +WK NYG + L GH + + V
Sbjct: 73 HTRTVRSCAWSPS-GQLLATASFDGTTGIWK------NYGSEFECISTLEGHENEVKSVS 125
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAG 328
++ G+ + S DK++ +W++ G
Sbjct: 126 WNASGSCLATCSRDKSVWIWEVLEG 150
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH + +A N + S S D+T +W + + L GH+ + +
Sbjct: 18 GHKKKVHSVAWNSN-GTKLASGSVDQTARIWNI-EPHGHSKAKDLELKGHTDSVDQLCWD 75
Query: 260 -SDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
+ + S DK++RLWD +GK T++ E
Sbjct: 76 PKHSDLVATASGDKSVRLWDARSGKCTQQVE 106
Score = 34.7 bits (76), Expect = 0.042
Identities = 22/90 (24%), Positives = 41/90 (45%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH + Q+ +PK+ D++ ++S DK++ +W + Q L G + ++
Sbjct: 62 LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCT---QQVELSGEN---INIT 115
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRR 343
DG + G+ D L + D+ K R
Sbjct: 116 YKPDGTHVAVGNRDDELTILDVRKFKPLHR 145
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 203 LPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
L + GH + V +S+G SGS D+T R+W++
Sbjct: 11 LHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNI 49
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWD--LAAGKTTR----RFEDHT 358
GH+ + + S GN SG D + +WD LA+ K TR RFE+HT
Sbjct: 250 GHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHRFEEHT 300
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 35.5 bits (78), Expect = 0.024
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH + ++ N ++ + RDK++ +W++ +E + L GHS + V+
Sbjct: 88 LRGHESEVKSVSWNAS-GSLLATCGRDKSVWIWEIQPEEDDEFDTIAVLTGHSEDVKMVL 146
Query: 254 LSSDGNYALSGSWDKTLRLW 313
+ S S+D T+++W
Sbjct: 147 WHPTMDVLFSCSYDNTIKIW 166
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWK---LTRDET 193
GH + +A NP +I S S DKT+ +W+ LTR T
Sbjct: 18 GHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSSLTRSWT 58
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 35.5 bits (78), Expect = 0.024
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQ-KRLYGHS---HFIS--DVVLSSDGNYA--LSG 286
+++S S+D ++ VW L R ++ Q LY H+ H +S D+V+ G A +S
Sbjct: 134 LLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYGGCNAVIISS 193
Query: 287 SWDKTLRLWDLAAGK 331
S D+T ++W L+ GK
Sbjct: 194 SEDRTCKVWSLSRGK 208
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
K+ +GH ++ +V S D + +SGS D ++R+W L
Sbjct: 114 KKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSL 149
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
I + +++G Y + G + LW++A GK +++ H
Sbjct: 81 IKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGH 119
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S D ++ VW + + K H ++ LS G LSGS DKT+R+
Sbjct: 865 LLFSGFSDGSIRVWNVNKKIATLLWDIKE---HKSTVTCFSLSETGECVLSGSADKTIRV 921
Query: 311 WDLAAGK 331
W + GK
Sbjct: 922 WQIVKGK 928
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 35.5 bits (78), Expect = 0.024
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR---DETNYGL-----PQKRLY-- 223
+ H G + Q+ +P + ++ SS D+ L+VW L R ++ L P + L+
Sbjct: 300 MSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSH 359
Query: 224 -GHSHFISDVVLSSDGNYAL-SGSWDKTLRLWDLA 322
GH ISD + + + + S + D +L++W +A
Sbjct: 360 GGHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMA 394
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 182 RDETNYGLPQKRLYGHSHFISDVVLSS-DGNYALSGSWDKTLRLWDLAA 325
+ +T+ P RL GH + S Y LSGS D+ + LWD++A
Sbjct: 152 KSQTSECDPDLRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSA 200
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/87 (22%), Positives = 42/87 (48%)
Frame = +2
Query: 56 LKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSH 235
L+ + ++ H+ + IA + + + S D+ + VW E + L L H
Sbjct: 225 LRCKESIKAHDDAVNAIAVSTN--GTVYTGSADRRIRVWAKPTGEKRHTLVAT-LEKHKS 281
Query: 236 FISDVVLSSDGNYALSGSWDKTLRLWD 316
++ + L+ DG+ SGS D+++ +W+
Sbjct: 282 AVNALALNDDGSVLFSGSCDRSILVWE 308
Score = 33.1 bits (72), Expect = 0.13
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Frame = +2
Query: 29 WGFIKMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLP 208
W S + +RG L GH+ I + D++LS S D+T+ +W+ D + L
Sbjct: 307 WEREDTSNYMAVRGALRGHDKAILSLFN---VSDLLLSGSADRTVRIWRRGPDSSYSCL- 362
Query: 209 QKRLYGHSHFISDVVL-----SSDGNYALSGSWDKTLRLWDLAAGKTTRRF 346
+ L GH+ + + D +SGS D ++ W ++ K F
Sbjct: 363 -EVLSGHTKPVKSLAAVREKELDDVVSIISGSLDGEVKCWKVSVTKPDNSF 412
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +2
Query: 209 QKRLY-GHSHFISDVVLSSDGNYALSGSWDKTLRLW---DLAAGKTTRRFED 352
+KRL+ H+ ++ + +S DG + S SWDKTL++W DL ++ + +D
Sbjct: 187 KKRLWIEHADAVTALAVS-DG-FIYSVSWDKTLKIWRASDLRCKESIKAHDD 236
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 35.1 bits (77), Expect = 0.032
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L GH ++ +P M+++ S D T+ VW R T+ + + H + DVV
Sbjct: 174 LLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWD-ARVHTSNWIAE---INHGLPVEDVV 229
Query: 254 -LSSDGNYALSGSWDKTLRLWDL-AAGKTTRRFEDHTK 361
L S G A +G ++++WDL GK E H K
Sbjct: 230 YLPSGGLIATAGG--NSVKVWDLIGGGKMVCSMESHNK 265
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 34.7 bits (76), Expect = 0.042
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
H +S + L+ + SGSWDKTL++W L+ K + H
Sbjct: 248 HYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAH 290
Score = 32.3 bits (70), Expect = 0.22
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S S DKTL VW+L+ + + + H I+ V D + +GS D TL++
Sbjct: 263 LLYSGSWDKTLKVWRLSDSKC-----LESIQAHDDAINTVAAGFD-DLLFTGSADGTLKV 316
Query: 311 WDL-AAGKTTRRF 346
W GK T+ F
Sbjct: 317 WKRELQGKGTKHF 329
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 34.7 bits (76), Expect = 0.042
Identities = 27/90 (30%), Positives = 38/90 (42%)
Frame = +2
Query: 47 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYG 226
S T+ RG GH + +A +P S D LI+W R TN ++ +
Sbjct: 279 SPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWD-ARTGTNPVTKVEKAHD 337
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
D D N L+GS D T+RL+D
Sbjct: 338 ADLHCVD-WNPHDDNLILTGSADNTVRLFD 366
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 34.7 bits (76), Expect = 0.042
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 215 RLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTT 337
R H ++ + ++DG Y LS D +RLWD+ +G+ T
Sbjct: 307 RATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNT 347
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 34.7 bits (76), Expect = 0.042
Identities = 22/98 (22%), Positives = 41/98 (41%)
Frame = +2
Query: 35 FIKMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQK 214
F+ +T +++ L GH + + +P ++ SSS D T+ +W + +
Sbjct: 460 FVWSKKTGQIKDILSGHEAPVHGLMFSP-LTQLLASSSWDYTVRLWDVFASKGTV----- 513
Query: 215 RLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAG 328
+ H+H + V DG S + D + WD G
Sbjct: 514 ETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEG 551
Score = 33.5 bits (73), Expect = 0.097
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTT 337
L GH + ++ S S SWD T+RLWD+ A K T
Sbjct: 473 LSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGT 512
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +2
Query: 161 LIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTR 340
L+VW R ET Y L Q+ GH ++ V S D +G+ D +++W++ +G
Sbjct: 331 LLVWDW-RTET-YILKQQ---GHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFI 385
Query: 341 RFEDHTKV*QNFYF 382
F +HT +F
Sbjct: 386 TFTEHTNAVTALHF 399
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 34.7 bits (76), Expect = 0.042
Identities = 22/98 (22%), Positives = 41/98 (41%)
Frame = +2
Query: 35 FIKMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQK 214
F+ +T +++ L GH + + +P ++ SSS D T+ +W + +
Sbjct: 500 FVWSKKTGQIKDILSGHEAPVHGLMFSP-LTQLLASSSWDYTVRLWDVFASKGTV----- 553
Query: 215 RLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAG 328
+ H+H + V DG S + D + WD G
Sbjct: 554 ETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEG 591
Score = 33.5 bits (73), Expect = 0.097
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTT 337
L GH + ++ S S SWD T+RLWD+ A K T
Sbjct: 513 LSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGT 552
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +2
Query: 161 LIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTR 340
L+VW R ET Y L Q+ GH ++ V S D +G+ D +++W++ +G
Sbjct: 371 LLVWDW-RTET-YILKQQ---GHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFI 425
Query: 341 RFEDHTKV*QNFYF 382
F +HT +F
Sbjct: 426 TFTEHTNAVTALHF 439
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 34.3 bits (75), Expect = 0.055
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 215 RLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTR 340
RL+GH I+ + L D SGSWD ++R+WD ++ K +
Sbjct: 252 RLWGHEGPITSLAL--DMTSIFSGSWDMSVRIWDRSSMKCVK 291
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 137 LSSSRD-KTLIVWKLTRDETNYGLPQ-KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
LS R K L V + R T G LYGH+ + V L + + +D +R+
Sbjct: 129 LSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVFLLASAKLVFTSGYDSIVRM 188
Query: 311 WDLAAG 328
WD+ G
Sbjct: 189 WDMEEG 194
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 34.3 bits (75), Expect = 0.055
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 47 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYG-LPQKRLY 223
SET+ +L GH + +I T P P +++++S+D+++ +W + ET L
Sbjct: 117 SETI--HKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLWNV---ETGICILIFAGAG 171
Query: 224 GHSHFISDVVLSSDGNYAL-SGSWDKTLRLWDL 319
GH + + V Y S D T+++W +
Sbjct: 172 GHRYEVLSVDFHPSDIYRFASCGMDTTIKIWSM 204
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 34.3 bits (75), Expect = 0.055
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Frame = +2
Query: 68 GTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISD 247
G L GH I +A D++LS S DK+L VW+ E L GH+ +
Sbjct: 322 GALRGHRKAIMCLAVAS---DLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKS 378
Query: 248 VVLS---SDGN-----YALSGSWDKTLRLWDL 319
+ +S SD N SGS D +L++W+L
Sbjct: 379 LAVSVSDSDSNSDYSCMVYSGSLDLSLKVWNL 410
Score = 33.1 bits (72), Expect = 0.13
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLW 313
H +S + LS DG+ S SWD++ ++W
Sbjct: 191 HVDAVSSLALSQDGSLLYSASWDRSFKIW 219
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+ + S DK + VW + + + L L H ++ + +S DG SG+ D+++ +W
Sbjct: 249 VYTGSADKKIKVWN--KKDKKHSLVAT-LTKHLSAVNALAISEDGKVLYSGACDRSILVW 305
Query: 314 D 316
+
Sbjct: 306 E 306
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 34.3 bits (75), Expect = 0.055
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGN----YALSGSWDKTLRLWDLAAG 328
GHS FI+ S Y +SGS D T+RLWD+ +G
Sbjct: 201 GHSEFITCTAFVSTPELTQGYLMSGSGDSTVRLWDITSG 239
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 33.9 bits (74), Expect = 0.073
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 262
H G + +A + ++ + S D+ L++W L + P + + HS ++ + +
Sbjct: 226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSAS--KPVQSVVAHSMEVNCLAFNP 283
Query: 263 DGNYAL-SGSWDKTLRLWDLAAGKTT-RRFEDH 355
+ + +GS DKT++L+DL T F+ H
Sbjct: 284 FNEWVVATGSTDKTVKLFDLRKLSTALHTFDSH 316
Score = 31.9 bits (69), Expect = 0.30
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL------PQKRLY--- 223
T H + Q+ NPK ++ S + L+VW L+R + + P + L+
Sbjct: 312 TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHG 371
Query: 224 GHSHFISDVVLSSDGNYALSG-SWDKTLRLWDLA 322
GH+ ISD + ++ +S + D L++W +A
Sbjct: 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 172
L GH+ + ++ NPK P M+ S+S D+T+ +W
Sbjct: 481 LSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 33.9 bits (74), Expect = 0.073
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = +2
Query: 269 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV*QNFYFW*K*CRKCV*RLYEAEDKCFVP 448
NY S +D ++LWD+ G+ F +H K + F C +L D C V
Sbjct: 767 NYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDF----SEACPTKLASGSDDCSVK 822
Query: 449 LRGRRVRNIL 478
L RN L
Sbjct: 823 LWNINERNCL 832
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 33.9 bits (74), Expect = 0.073
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 71 TLCGHNGWITQIA-TNPKYPDMILSSSRDKTLIVWK 175
TL GH G + Q+A +PK+ ++ S S D +I+WK
Sbjct: 51 TLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWK 86
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
PQK GHS I DVV+ G + S D T+++
Sbjct: 3 PQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKI 37
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 33.9 bits (74), Expect = 0.073
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+ + S D T+ W L +D G + GH +S +V+ + Y SGSWD T+RLW
Sbjct: 600 VYTGSGDNTIKAWSL-QD----GSLLCTMSGHKSVVSTLVVVNGVLY--SGSWDGTVRLW 652
Query: 314 DLA 322
L+
Sbjct: 653 SLS 655
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 33.5 bits (73), Expect = 0.097
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKT 334
H H ++ V LS D + S S D T+ WD+++GK+
Sbjct: 144 HQHSVTGVALSDDDSRGFSVSKDGTILHWDVSSGKS 179
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 33.5 bits (73), Expect = 0.097
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 47 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLT-----RDETNYGLPQ 211
S L+L +LC H + + + Y MI SSS D T+I+W L+ R N+ +P
Sbjct: 3311 SRRLRLEKSLCAHTAKVICLRVSQPYM-MIASSSDDCTVIIWDLSSLSFVRQLPNFSVPV 3369
Query: 212 KRLY 223
+Y
Sbjct: 3370 TVVY 3373
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 33.5 bits (73), Expect = 0.097
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +2
Query: 134 ILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+++ S D+ + +W + ET L R GH I+D+ +SS+ S S D +R+W
Sbjct: 320 VITGSDDRLVKIWSM---ETALCLASCR--GHEGDITDLAVSSNNALVASASNDFVIRVW 374
Query: 314 DLAAGKTTRRFEDHT 358
L G HT
Sbjct: 375 RLPDGMPISVLRGHT 389
Score = 31.5 bits (68), Expect = 0.39
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
K+L GH + + + G Y ++GS D+ +++W +
Sbjct: 299 KKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM 334
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 33.5 bits (73), Expect = 0.097
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 71 TLCGHNGWITQIA-TNPKYPDMILSSSRDKTLIVWK 175
TL GH G + ++A +PKY ++ S S D +I+WK
Sbjct: 51 TLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWK 86
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 33.5 bits (73), Expect = 0.097
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS- 259
H + + NP D L+SS D T+ +W + R + + H++ + V +
Sbjct: 105 HAREVQSVDYNPTRRDSFLTSSWDDTVKLWAMDRPAS-----VRTFKEHAYCVYQAVWNP 159
Query: 260 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
G+ S S D TLR+WD+ +T H
Sbjct: 160 KHGDVFASASGDCTLRIWDVREPGSTMIIPAH 191
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 262
H + Q NPK+ D+ S+S D TL +W + + +P +S
Sbjct: 148 HAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIPAHDF----EILSCDWNKY 203
Query: 263 DGNYALSGSWDKTLRLWDL 319
D + S DKT+++WD+
Sbjct: 204 DDCILATSSVDKTVKVWDV 222
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 269 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
N SGS DK +++WD+A GK E H K
Sbjct: 228 NIVASGSEDKKVKVWDVATGKCKVTMEHHEK 258
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
L GHS+ + + +S DG ++G+ D+TLR W++
Sbjct: 418 LTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNV 451
Score = 32.3 bits (70), Expect = 0.22
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +2
Query: 32 GFIKMSETLKLRG--TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 205
G +++ + L+ + T+ GH + +A + ++ S SRDK+++ + E +
Sbjct: 231 GTVQIWDVLRCKNIRTMEGHRLRVGALAWSSS---VLSSGSRDKSILQRDIRTQEDHVS- 286
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
+L GH I + SSD SG D L +W+ + + RF +H
Sbjct: 287 ---KLKGHKSEICGLKWSSDNRELASGGNDNKLFVWNQHSTQPVLRFCEH 333
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 203 LPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
L + R HS + +SSDG Y +G D+ + +WD+ + + F H
Sbjct: 213 LREPRNKNHSRESLALAVSSDGRYLATGGVDRHVHIWDVRTREHVQAFPGH 263
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTR 340
H + V LS D + S S D T+ WD+++GKT +
Sbjct: 160 HRRSVVSVALSDDDSRGFSASKDGTIMHWDVSSGKTDK 197
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 221 YGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTR 340
+GH ++ + LS D N+ ++GS D T+ LW + T+R
Sbjct: 2665 FGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIHKAFTSR 2704
Score = 28.7 bits (61), Expect(2) = 0.36
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +2
Query: 47 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETN 196
S+ K T GH +T +A +P + +++ SRD T+++W++ + T+
Sbjct: 2655 SDGAKTLETAFGHCAPVTCLALSPDN-NFLVTGSRDSTVLLWRIHKAFTS 2703
Score = 21.4 bits (43), Expect(2) = 0.36
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR 343
P + L GH + +SSD +S S + L + G+ RR
Sbjct: 2741 PIQVLRGHRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIRR 2786
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGK 331
GH+ ++ + S G + SGS D ++R+W++ G+
Sbjct: 421 GHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGR 456
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 245 DVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKV 364
+ + DG Y LSGS D TL W++ R+E++ V
Sbjct: 249 EATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGV 288
Score = 30.3 bits (65), Expect = 0.90
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 122 YPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLY-GHSHFISDVVLSSDGNYALSGSWDK 298
+P ++ SSR + R + Y R + GH + + +S + +SGS D+
Sbjct: 77 HPSSLICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDR 136
Query: 299 TLRLWDL 319
++RLWDL
Sbjct: 137 SVRLWDL 143
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 32.3 bits (70), Expect = 0.22
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 172
L GH W + NP+Y ++ILS D + +W
Sbjct: 248 LPGHTHWTWAVRCNPEYEELILSVGTDSAVNLW 280
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 32.3 bits (70), Expect = 0.22
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 172
L GH W + NP+Y +ILS+ D + +W
Sbjct: 248 LPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLW 280
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQK--RLYGHSHFISDVV 253
G W+ + + + SS +K + K + + G+ R H ++ +
Sbjct: 261 GDQNWLKTLQSKHTGSQSVKGSSSEKPSVE-KSRQKRIHPGMLSTLDRATAHYGVVTGLK 319
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTT 337
++DG Y LS +RLWD+ +G+ T
Sbjct: 320 ATNDGMYLLSAGSYSRIRLWDIESGRNT 347
>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
damage-specific DNA binding protein 2 (GI:10798819)
[Homo sapiens]
Length = 557
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 113 NPKYPDMILSSSRDKTLIVW---KLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALS 283
NP P+++LS D +W KL + + L KR+ ++F S G L+
Sbjct: 321 NPVQPELLLSCGNDHFARIWDMRKLQPKASLHDLAHKRVVNSAYF-----SPSSGTKILT 375
Query: 284 GSWDKTLRLWDLAAG 328
D +R+WD G
Sbjct: 376 TCQDNRIRIWDSIFG 390
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 31.9 bits (69), Expect = 0.30
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH+G I I+ + + +LS+S D ++ +W++ ++ ++ H+++++ V +
Sbjct: 354 GHSGDILDISWSKN--NRLLSASVDNSVRLWQIGCEDC------LGIFSHNNYVTSVQFN 405
Query: 260 S-DGNYALSGSWDKTLRLW 313
D ++ +SGS D +R+W
Sbjct: 406 PVDDDHFISGSIDGKVRIW 424
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 184
HN ++T + NP D +S S D + +W ++
Sbjct: 395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQ 428
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 31.9 bits (69), Expect = 0.30
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH+G I I+ + + +LS+S D ++ +W++ ++ ++ H+++++ V +
Sbjct: 354 GHSGDILDISWSKN--NRLLSASVDNSVRLWQIGCEDC------LGIFSHNNYVTSVQFN 405
Query: 260 S-DGNYALSGSWDKTLRLW 313
D ++ +SGS D +R+W
Sbjct: 406 PVDDDHFISGSIDGKVRIW 424
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 184
HN ++T + NP D +S S D + +W ++
Sbjct: 395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQ 428
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 31.9 bits (69), Expect = 0.30
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
P L GH+ +S V G +G+ D L+LW + G+ R +E H
Sbjct: 105 PALTLQGHTKTVSYVRFLDGGTVVTAGT-DGCLKLWSVEDGRVIRTYEGH 153
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKV*QNFYFW*K 391
H +++ +V + + + +S S DKTLR+WDL T + F + H F W K
Sbjct: 453 HDGYVTKLV-APESHLLVSSSLDKTLRIWDLRKSWTPQPFVVKGHNDGVSGFSIWGK 508
Score = 30.7 bits (66), Expect = 0.68
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDET 193
H+G++T++ + +++SSS DKTL +W L + T
Sbjct: 453 HDGYVTKLVAPESH--LLVSSSLDKTLRIWDLRKSWT 487
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
K+L H ++ V ++DG+ LSGS D+ + LWD F+
Sbjct: 49 KKLDKHKGCVNTVSFNADGDILLSGSDDRQVILWDWQTASVKLSFD 94
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 200 GLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
G+ L H ++D+ SSD ++ +S S D T+++WD
Sbjct: 1071 GVLVAHLQEHRSAVNDIATSSDHSFFVSASDDSTVKVWD 1109
Score = 30.3 bits (65), Expect = 0.90
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
M++ S+++ + +W D + L G ++S +V S GN+ +SGS L L
Sbjct: 1203 MVMYSTQNCGIHLWDTRSDLDAWTLKANPEEG---YVSSLVTSPCGNWFVSGSSRGVLTL 1259
Query: 311 WDL 319
WDL
Sbjct: 1260 WDL 1262
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
L GH++ + + +S DG ++G+ D+TLR W++
Sbjct: 461 LTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNV 494
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S SRDK+++ + E + +L GH + + S D SG D L +
Sbjct: 306 VLSSGSRDKSILQRDIRCQEDHVS----KLAGHKSEVCGLKWSYDNRELASGGNDNRLFV 361
Query: 311 WDLAAGKTTRRFEDHT 358
W+ + + ++ +HT
Sbjct: 362 WNQHSTQPVLKYSEHT 377
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 31.5 bits (68), Expect = 0.39
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +2
Query: 134 ILSSSRDKTLIVWK---LTRDETNYG----LPQKRLYGHSHFISDVVLSSDGNYALSGSW 292
I S + +IVW+ L D ++G RL GH I +V S DG+ +S S
Sbjct: 196 IASGTIFNEIIVWRAVGLDGDNVDHGHYSASHMLRLTGHEGSIFRIVWSLDGSKIVSVSD 255
Query: 293 DKTLRLWDL 319
D++ R+W++
Sbjct: 256 DRSARIWEI 264
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 31.5 bits (68), Expect = 0.39
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +2
Query: 134 ILSSSRDKTLIVWK---LTRDETNYG----LPQKRLYGHSHFISDVVLSSDGNYALSGSW 292
I S + +IVW+ L D ++G RL GH I +V S DG+ +S S
Sbjct: 196 IASGTIFNEIIVWRAVGLDGDNVDHGHYSASHMLRLTGHEGSIFRIVWSLDGSKIVSVSD 255
Query: 293 DKTLRLWDL 319
D++ R+W++
Sbjct: 256 DRSARIWEI 264
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
H+ +S + L+ + S SWD+T+++W +A K H
Sbjct: 205 HADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLESIPAH 247
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRL 310
++ S+S D+T+ VW++ + +P H ++ VV +++ SGS D T++
Sbjct: 220 LLYSASWDRTIKVWRIADSKCLESIP-----AHDDAVNSVVSTTEA-IVFSGSADGTVKA 273
Query: 311 W 313
W
Sbjct: 274 W 274
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGN---------YALS 283
++ S S DKT+ VWK RD N L GH+ + + + +D S
Sbjct: 350 LVFSGSADKTICVWK--RD-GNIHTCLSVLTGHTGPVKCLAVEADREASERRDKKWIVYS 406
Query: 284 GSWDKTLRLWDLA 322
GS DK++++W ++
Sbjct: 407 GSLDKSVKVWGVS 419
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 31.5 bits (68), Expect = 0.39
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 173 KLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR 343
K+ R + N G + L H + V S ++GSWDKT++ WD T R
Sbjct: 79 KVRRIDFNAG-KEDVLGTHEKPVRCVEYSYAAGQVITGSWDKTIKCWDPRGASGTER 134
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWD 316
IS++ S++ ++ L SWDK++RL+D
Sbjct: 19 ISNLRFSNNSDHLLVSSWDKSVRLYD 44
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 31.1 bits (67), Expect = 0.52
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWD--LAAGKTTR----RFEDHT 358
GH+ + + S G SG D + +WD LA+ TR RFE+HT
Sbjct: 234 GHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHT 284
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL--AAGKTTRR 343
L GH+ + + S DG S + D+TLRLW++ KTT++
Sbjct: 368 LNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKK 411
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 346
K+L H ++ V +++G+ +SGS D+ + LWD G F
Sbjct: 53 KKLEKHKGCVNTVSFNAEGDVLISGSDDRRVVLWDWQLGNVKLSF 97
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 31.1 bits (67), Expect = 0.52
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Frame = +2
Query: 29 WGFIKMSETLK---LRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE--T 193
W +K SE L+G+ G I+ I+ N K ++ S+S + T ++W L + +
Sbjct: 150 WDLLKPSEPSHFPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQKPII 209
Query: 194 NYGLPQKR----LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLA-AGKTTRRFEDHT 358
N+ +R L + + + ++++SD + + TL+LWD+ R F H
Sbjct: 210 NFADSVRRRCSVLQWNPNVTTQIMVASDDDSS------PTLKLWDMRNIMSPVREFTGHQ 263
Query: 359 K 361
+
Sbjct: 264 R 264
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 31.1 bits (67), Expect = 0.52
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Frame = +2
Query: 29 WGFIKMSETLK---LRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE--T 193
W +K SE L+G+ G I+ I+ N K ++ S+S + T ++W L + +
Sbjct: 150 WDLLKPSEPSHFPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQKPII 209
Query: 194 NYGLPQKR----LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLA-AGKTTRRFEDHT 358
N+ +R L + + + ++++SD + + TL+LWD+ R F H
Sbjct: 210 NFADSVRRRCSVLQWNPNVTTQIMVASDDDSS------PTLKLWDMRNIMSPVREFTGHQ 263
Query: 359 K 361
+
Sbjct: 264 R 264
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 31.1 bits (67), Expect = 0.52
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 212 KRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
KRL+ H S L+ SGSWDKTL++W L+ K + H
Sbjct: 167 KRLW-IEHADSISCLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAH 213
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +2
Query: 128 DMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSD----GNYALSGSWD 295
+M+ S S DK++ +W+ R+ T ++GH + + S + G SG D
Sbjct: 329 EMVCSGSADKSIGLWR--REVTGMLCKFGVIHGHEGPVKCLQASPNNVGAGFMLYSGGLD 386
Query: 296 KTLRLW 313
K+LR+W
Sbjct: 387 KSLRVW 392
>At1g17720.2 68414.m02194 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to type 2A
protein serine/threonine phosphatase 55 kDa B regulatory
subunit (GI:1408460) [Arabidopsis thaliana]; similar to
55 kDa B regulatory subunit of phosphatase 2A GI:710330;
contains Pfam PF00400: WD domain, G-beta repeat (5
copies, 3 weak)
Length = 500
Score = 31.1 bits (67), Expect = 0.52
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 176 LTRDETNYGLPQKRLYGHSH--FISDVVLSSDGNYALSGSWDKTLRLWDL 319
+T ETN +R+Y H+H I+ + SSDG +S D + LW+L
Sbjct: 201 VTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISAD-DLRVNLWNL 249
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDL 319
ISD+ S DG Y LS + TL+LWD+
Sbjct: 332 ISDIKFSKDGRYILSRDY-MTLKLWDI 357
>At1g17720.1 68414.m02193 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to type 2A
protein serine/threonine phosphatase 55 kDa B regulatory
subunit (GI:1408460) [Arabidopsis thaliana]; similar to
55 kDa B regulatory subunit of phosphatase 2A GI:710330;
contains Pfam PF00400: WD domain, G-beta repeat (5
copies, 3 weak)
Length = 501
Score = 31.1 bits (67), Expect = 0.52
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 176 LTRDETNYGLPQKRLYGHSH--FISDVVLSSDGNYALSGSWDKTLRLWDL 319
+T ETN +R+Y H+H I+ + SSDG +S D + LW+L
Sbjct: 202 VTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISAD-DLRVNLWNL 250
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDL 319
ISD+ S DG Y LS + TL+LWD+
Sbjct: 333 ISDIKFSKDGRYILSRDY-MTLKLWDI 358
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 30.7 bits (66), Expect = 0.68
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
L GHS + + S DG ++G+ D+TLR W++
Sbjct: 424 LTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNV 457
Score = 27.5 bits (58), Expect = 6.4
Identities = 22/96 (22%), Positives = 44/96 (45%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDV 250
T+ GH +A N + ++ S SRD+ ++ + R ++++ +L GH + +
Sbjct: 252 TMGGHQTRTGVLAWNSR---ILSSGSRDRNILQHDI-RVQSDF---VSKLVGHKSEVCGL 304
Query: 251 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT 358
S D SG D L +W+ + + + +HT
Sbjct: 305 KWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHT 340
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 30.7 bits (66), Expect = 0.68
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 206 PQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
P L GH H + DV + +GS D LR+WD
Sbjct: 9 PVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWD 45
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 30.7 bits (66), Expect = 0.68
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 215 RLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAG 328
+L GH ++ V +S G+ +SGS D+ + LW+ +G
Sbjct: 50 KLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSG 87
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 30.7 bits (66), Expect = 0.68
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 62 LRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQ 211
LR GH+ +T +A + DM+ S S D + VWK++ PQ
Sbjct: 194 LRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQ 243
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 30.7 bits (66), Expect = 0.68
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 62 LRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQ 211
LR GH+ +T +A + DM+ S S D + VWK++ PQ
Sbjct: 229 LRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQ 278
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 30.7 bits (66), Expect = 0.68
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR 343
H +S V +++D +GS+D T+ +WD+ +T +
Sbjct: 1045 HKDVVSCVAVTADSTILATGSYDTTVMVWDILRMRTPEK 1083
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 30.7 bits (66), Expect = 0.68
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH 355
HS +S + L+ D S SWD+T+++W + K + H
Sbjct: 134 HSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAH 176
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 30.3 bits (65), Expect = 0.90
Identities = 19/85 (22%), Positives = 34/85 (40%)
Frame = +2
Query: 101 QIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYAL 280
++ T P + M+ SS K + + R+ H+ +S + L +
Sbjct: 200 RVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTK--------HNDAVSSLSLDVELGLLY 251
Query: 281 SGSWDKTLRLWDLAAGKTTRRFEDH 355
S SWD T+++W +A K H
Sbjct: 252 SSSWDTTIKVWRIADSKCLESIHAH 276
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 269 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
N S S DK +++WD+A G E HTK
Sbjct: 279 NILASASADKKVKVWDVATGTCKITMEHHTK 309
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 30.3 bits (65), Expect = 0.90
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDM--ILSSSRDKTLIVWKLTRDETNYG-LPQKRLYGHSHFI 241
T+ GH+ ++ + K+ D ++SSS D TL +W L+ + P GH++
Sbjct: 699 TMIGHSKTVSYV----KFVDSSTLVSSSTDNTLKLWDLSMSASGINESPLHSFTGHTNLK 754
Query: 242 SDVVLSSDGNYALSGS 289
+ V LS Y +GS
Sbjct: 755 NFVGLSVSDGYIATGS 770
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 30.3 bits (65), Expect = 0.90
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPD--MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
GH+ + +A +P PD ++S+S+D + L ET + GH +
Sbjct: 9 GHSRPVVDVAYSPVTPDGFFLISASKDSNPM---LRNGETGDWIGT--FEGHKGAVWSCS 63
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
L + A S S D T ++W+ G FE
Sbjct: 64 LDKNAIRAASASADFTAKIWNALTGDELHSFE 95
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 30.3 bits (65), Expect = 0.90
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 131 MILSSSRDKTLIVWKLTRDETNYGLP---QKRLYGHSHFISDVVLSSDGNYALSGSWDKT 301
++++ + D + VW++++D +K L H+ ++ + +S SGS D T
Sbjct: 3344 IVVTGAEDGLVCVWRVSKDGPRGSRRLRLEKALCAHTAKVTCLRVSQPYMMIASGSDDCT 3403
Query: 302 LRLWDLAAGKTTRRFED 352
+ +WDL++ R+ D
Sbjct: 3404 VIIWDLSSLSFVRQLPD 3420
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
GH + + L S G +SGS D+T+ LWD
Sbjct: 118 GHHDRVVSLSLCSGGECFISGSLDRTVLLWD 148
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
GH + + L S G +SGS D+T+ LWD
Sbjct: 115 GHHDRVVSLSLCSGGECFISGSLDRTVLLWD 145
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/84 (26%), Positives = 35/84 (41%)
Frame = +2
Query: 65 RGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFIS 244
RG GH + +A P S D L++W R T+ + ++ +
Sbjct: 274 RGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWD-ARTGTSPAMKVEKAHDADLHCV 332
Query: 245 DVVLSSDGNYALSGSWDKTLRLWD 316
D D N L+GS D T+R++D
Sbjct: 333 D-WNPHDNNLILTGSADNTVRVFD 355
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNY---GLPQKR----LYGHSHFI 241
H G + +I P+ ++ + + +++W Y G P R L GH
Sbjct: 152 HPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDA 211
Query: 242 S-DVVLSSDGNYALSGSWDKTLRLWDL 319
+ + + LSG DK++ LW++
Sbjct: 212 EFALAMCPTEPFVLSGGKDKSVILWNI 238
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 346
IS++ S++ ++ L SWDK +RL+D++ F
Sbjct: 20 ISNLRFSNNSDHLLVSSWDKRVRLYDVSTNSLKGEF 55
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 170 WKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWD 316
+K+ R N G + L H + V S ++GSWDKT++ WD
Sbjct: 79 YKVRRIVFNVG-KEDILGTHDKAVRCVEYSYAAGQVITGSWDKTVKCWD 126
>At4g28620.1 68417.m04092 ABC transporter family protein identical
to half-molecule ABC transporter ATM2 GI:9964119 from
[Arabidopsis thaliana]
Length = 680
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 141 LHHEI-KLLSCGN*LETKPTTACHRSVCTVTPI 236
LHH KL+ + LE+ PT A H+S +TP+
Sbjct: 28 LHHSFFKLIKRNSILESPPTNASHQSPSPITPM 60
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 239 ISDVVLSSDGNYALSGSWDKTLRLWD--LAAGKTTRRFED 352
+ ++V S +G Y L+ S D+T+R+++ L A + ED
Sbjct: 219 VKNIVFSRNGQYLLTNSHDRTIRIYENLLPAKNVLKSLED 258
Score = 27.5 bits (58), Expect = 6.4
Identities = 23/86 (26%), Positives = 39/86 (45%)
Frame = +2
Query: 86 NGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSD 265
+G I +A N + ++ + D ++W ET + R S I+ V S
Sbjct: 23 HGVIKCVAFNHR-GSLLAAGCADGGCVIWDF---ETRGIAKEIRDNDCSAAITSVSWSKY 78
Query: 266 GNYALSGSWDKTLRLWDLAAGKTTRR 343
G+ L + DK+L LWD++ G+ R
Sbjct: 79 GHRLLVSAADKSLTLWDVSTGEKIAR 104
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 224 GHSHFISDVVLS---SDGNYALSGSWDKTLRLWD 316
GH+ +S V S G + +SG DKT+++WD
Sbjct: 246 GHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWD 279
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 224 GHSHFISDVVLS---SDGNYALSGSWDKTLRLWD 316
GH+ +S V S G + +SG DKT+++WD
Sbjct: 272 GHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWD 305
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWD---LAAGKTTR----RFEDHT 358
GH+ + + S G SG D + +WD +A+ TR RFE+HT
Sbjct: 216 GHTEEVCGLKWSESGKKLASGGNDNVVHIWDHRSVASSNPTRQWLHRFEEHT 267
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 218 LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL--AAGKTTRR 343
L GH+ + + S DG S + D+TLRLW++ KTT++
Sbjct: 351 LNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKK 394
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +2
Query: 209 QKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGK 331
++ L GH ++ + +S+G+ +SGS D + +W+ ++ K
Sbjct: 43 EQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRK 83
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 224 GHSHFISDVVLSSDGNYALSGSWDKTLRLWDLA 322
GH I V S DG L+ S DK+ ++WD++
Sbjct: 230 GHKGSIYAVSWSPDGKQVLTVSADKSAKIWDIS 262
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 224 GHSHFISDV-VLSSDGNYALSGSWDKTLRLWDLAAG 328
GH +S + VL + +Y LSGS+D + W L G
Sbjct: 322 GHMKNVSSLAVLKGNADYILSGSYDGLICKWMLGRG 357
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 188 ETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
+ N G + L GH F DG +G+ DKT R+WD+
Sbjct: 305 DPNTGKTLETLSGHLDFSFASAWHPDGVTFSTGNQDKTCRVWDI 348
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 227 HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGK 331
HS ++ + SSDG Y SG + L +W L GK
Sbjct: 282 HSAEVNVLNFSSDGAYLYSGGREGVLVVWQLDTGK 316
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYG-LPQKRLYGHSHFISD 247
T+ GH+ ++ + ++SSS D TL +W L+ + P GH++ +
Sbjct: 657 TMIGHHKTVSYVRFVDS--STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 714
Query: 248 VVLSSDGNYALSGS 289
V LS Y +GS
Sbjct: 715 VGLSVSDGYIATGS 728
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 71 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYG-LPQKRLYGHSHFISD 247
T+ GH+ ++ + ++SSS D TL +W L+ + P GH++ +
Sbjct: 657 TMIGHHKTVSYVRFVDS--STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 714
Query: 248 VVLSSDGNYALSGS 289
V LS Y +GS
Sbjct: 715 VGLSVSDGYIATGS 728
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
G G ++ +A +P M+ S +T +++ E Y L +G ++ V S
Sbjct: 210 GQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVL-----HGQEGGVTHVQFS 264
Query: 260 SDGNYALSGS-WDKTLRLWDL 319
DGNY +G D + WD+
Sbjct: 265 KDGNYLYTGGRKDPYILCWDI 285
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 278 LSGSWDKTLRLWDLAAGKTTRRFEDH 355
+SGS D T+R+WDL +G H
Sbjct: 553 ISGSMDCTIRIWDLESGNVIMIMHHH 578
>At3g45370.1 68416.m04898 hypothetical protein
Length = 224
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 340 PGCLSSGKIPKPESFVPGTGKSVISITGQYNVRNEM 233
PG + +P P FVPG GQ N+ NEM
Sbjct: 75 PGDMGPDFVPAPRDFVPGQVIHPGKFFGQTNLSNEM 110
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 28.7 bits (61), Expect = 2.8
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPD--MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
GH+ + + +P PD ++S+S+D + L ET + GH +
Sbjct: 14 GHSRPVVDLFYSPITPDGFFLISASKDSQPM---LRNGETGDWIGT--FEGHKGAVWSSC 68
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
L ++ A S S D + +LWD G FE
Sbjct: 69 LDNNALRAASASADFSAKLWDALTGDVLHSFE 100
>At5g60050.1 68418.m07530 PRLI-interacting factor-related contains
weak similarity to PRLI-interacting factor G
(GI:11139264) [Arabidopsis thaliana]
Length = 499
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 149 RDKTLIVWKLTRDETNYGLPQKRLYGHSH 235
R+ ++++KL R+E +Y + + LYG H
Sbjct: 271 REMKVLIFKLVREEADYDVSRDTLYGLCH 299
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = +2
Query: 140 SSSRD-KTLIVWKLTRDETNYGLPQKR-----LYGHSHFISDVVLSS-DGNYALSGSWDK 298
S SRD K L+ L+ + +PQ L GH ++DVV SS D + S D+
Sbjct: 70 SLSRDGKILVTCSLSGVPKLWEVPQVTNKIVVLKGHKEHVTDVVFSSVDDECLATASTDR 129
Query: 299 TLRLW 313
T ++W
Sbjct: 130 TEKIW 134
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/64 (34%), Positives = 27/64 (42%)
Frame = +2
Query: 140 SSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
SS D VW L R N + Q GH + V S +G + SG D R+WDL
Sbjct: 147 SSGFDSLARVWDL-RTARNILIFQ----GHIKQVLSVDFSPNGYHLASGGEDNQCRIWDL 201
Query: 320 AAGK 331
K
Sbjct: 202 RMRK 205
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +2
Query: 83 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSS 262
H+ ++ I +P I SS K +I T D+ + GH I V S
Sbjct: 50 HSNFVNCIRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASED---GHKGSIYAVSWSP 106
Query: 263 DGNYALSGSWDKTLRLWDLAAGKT 334
D L+ S DK+ ++W++A T
Sbjct: 107 DSKRVLTVSADKSAKVWEVAEDGT 130
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +2
Query: 98 TQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYA 277
T +A +P+ ++I D T+ ++ + DE + +L GHS I+ + S+ N
Sbjct: 869 TFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEV-----KSKLKGHSKRITGLAFSNVLNVL 923
Query: 278 LSGSWDKTLRLWD 316
+S D L +W+
Sbjct: 924 VSSGADAQLCVWN 936
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 293 DKTLRLWDLAAGKTTRRFEDH 355
DKT+++WD A G FE H
Sbjct: 485 DKTIKVWDAATGVKRYTFEGH 505
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +2
Query: 98 TQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYA 277
T +A +P+ ++I D T+ ++ + DE + +L GHS I+ + S+ N
Sbjct: 869 TFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEV-----KSKLKGHSKRITGLAFSNVLNVL 923
Query: 278 LSGSWDKTLRLWD 316
+S D L +W+
Sbjct: 924 VSSGADAQLCVWN 936
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 293 DKTLRLWDLAAGKTTRRFEDH 355
DKT+++WD A G FE H
Sbjct: 485 DKTIKVWDAATGVKRYTFEGH 505
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 188 ETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDL 319
+ N G L GH F DG +G+ DKT R+WD+
Sbjct: 303 DPNTGKTLATLSGHLDFSFASAWHPDGFTFSTGNQDKTCRVWDI 346
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 28.3 bits (60), Expect = 3.6
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPD--MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
GH+ + + +P PD ++S+S+D + L ET + GH +
Sbjct: 14 GHSRPVVDLFYSPITPDGFFLISASKDSHPM---LRNGETGDWIGT--FEGHKGAVWSSC 68
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
L ++ A S S D + +LWD G FE
Sbjct: 69 LDNNALRAASASADFSAKLWDALTGDVLHSFE 100
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 28.3 bits (60), Expect = 3.6
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPD--MILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
GH+ + + +P PD ++S+S+D + L ET + GH +
Sbjct: 14 GHSRPVVDLFYSPITPDGFFLISASKDSHPM---LRNGETGDWIGT--FEGHKGAVWSSC 68
Query: 254 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 349
L ++ A S S D + +LWD G FE
Sbjct: 69 LDNNALRAASASADFSAKLWDALTGDVLHSFE 100
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Frame = +2
Query: 74 LCGHNGWITQIA------TNPKYPD--MILSSSRDKTLIVWKL 178
L GH WI + T + P+ M++SSS+DK + +WKL
Sbjct: 219 LKGHTDWIRSLDFSLPLHTTEEIPNSIMLVSSSQDKVIRIWKL 261
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 179 TRDETNYGLPQKRLYGHSHFISDVVLSSDGNYALSGSWDKTLRLW 313
+++ N+ + QK GH ++DV + G Y LS S D+T R++
Sbjct: 399 SKESENWQM-QKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVF 442
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Frame = +2
Query: 56 LKLRGTLCGHNGWITQIATNPKYPDMI------------LSSSRDKTLIVWK 175
+ + L GH W+ + P D I LS+S DKT+++W+
Sbjct: 294 ISVESVLIGHEDWVYSVEWQPPVIDFIDGRLVNHQPLSILSASMDKTMMIWR 345
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 28.3 bits (60), Expect = 3.6
Identities = 24/104 (23%), Positives = 47/104 (45%)
Frame = +2
Query: 50 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGH 229
+T +L L GH+ ++ + + +L+++ D T+ +W + D + +
Sbjct: 927 QTTQLLEELKGHDSQVSCVKMLSG--ERVLTAAHDGTVKMWDVRTDMCVATVGRCS---- 980
Query: 230 SHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
S +S S G A +G D +WD+ +GK + + HTK
Sbjct: 981 SAILSLEYDDSTGILAAAGR-DTVANIWDIRSGKQMHKLKGHTK 1023
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +2
Query: 74 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVV 253
L H G + + N K P+ + S + D T+ +W D N P L G ++ +
Sbjct: 111 LSKHKGPVRGLEFNVKSPNQLASGADDGTVCIW----DLANPSKPSHYLKGTGSYMQSEI 166
Query: 254 LSSDGNYAL-----SGSWDKTLRLWDL 319
S N S S + T +WD+
Sbjct: 167 SSLSWNKGFQHVLASTSHNGTTVIWDV 193
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 293 DKTLRLWDLAAGKTTRRFEDH 355
DKT+++WD A G FE H
Sbjct: 485 DKTIKVWDAATGVKRHTFEGH 505
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +2
Query: 98 TQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYA 277
T +A +P+ ++I D T+ ++ + DE + +L GHS I+ + S+ N
Sbjct: 880 TFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEV-----KSKLKGHSKRITGLAFSNVLNVL 934
Query: 278 LSGSWDKTLRLWD 316
+S D L +W+
Sbjct: 935 VSSGADAQLCVWN 947
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 293 DKTLRLWDLAAGKTTRRFEDH 355
DKT+++WD A G FE H
Sbjct: 485 DKTIKVWDAATGVKRHTFEGH 505
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +2
Query: 98 TQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYA 277
T +A +P+ ++I D T+ ++ + DE + +L GHS I+ + S+ N
Sbjct: 880 TFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEV-----KSKLKGHSKRITGLAFSNVLNVL 934
Query: 278 LSGSWDKTLRLWD 316
+S D L +W+
Sbjct: 935 VSSGADAQLCVWN 947
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 80 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLS 259
GH+ + + + P+++ + S D W + RD + H+ + + +
Sbjct: 161 GHDFELWTASFDLNNPNLVYTGSDDCKFSCWDI-RDSPADNRVFQNSKVHTMGVCCISSN 219
Query: 260 SDGNYAL-SGSWDKTLRLWD 316
Y++ +GS+D+TLR+WD
Sbjct: 220 PSDPYSIFTGSYDETLRVWD 239
>At5g18420.3 68418.m02170 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 439
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 162 RVLSRDEDKIMSGYLGLVAI*VIQPLWPQSVPLSFNV---SLIFINP 31
R+ S D D+ +SG+LG + + + P W + P + V L++I+P
Sbjct: 196 RIGSGDRDEALSGFLGNLTMGGLGPRWIRPCPPRYPVHQSELLWIDP 242
>At5g18420.2 68418.m02169 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 442
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 162 RVLSRDEDKIMSGYLGLVAI*VIQPLWPQSVPLSFNV---SLIFINP 31
R+ S D D+ +SG+LG + + + P W + P + V L++I+P
Sbjct: 199 RIGSGDRDEALSGFLGNLTMGGLGPRWIRPCPPRYPVHQSELLWIDP 245
>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 441
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 162 RVLSRDEDKIMSGYLGLVAI*VIQPLWPQSVPLSFNV---SLIFINP 31
R+ S D D+ +SG+LG + + + P W + P + V L++I+P
Sbjct: 199 RIGSGDRDEALSGFLGNLTMGGLGPRWIRPCPPRYPVHQSELLWIDP 245
>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28170, At1g35110,
At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
At2g10350
Length = 1043
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 116 PKYPDMILSSSRDKTLIVWK-LTRDETNYGLPQ 211
P D++L S KT+++WK LT + LPQ
Sbjct: 220 PGLLDLVLDDSTSKTILLWKRLTHPKQVISLPQ 252
>At3g33230.1 68416.m04296 hypothetical protein
Length = 154
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 340 PGCLSSGKIPKPESFVPGTGKSVISITGQYNVRNEM 233
PG + +P P FVPG GQ N+ NEM
Sbjct: 6 PGDMGPDFVPAPRDFVPGEVIWPGKFFGQTNLSNEM 41
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 293 DKTLRLWDLAAGKTTRRFEDH 355
DKT+++WD G FE H
Sbjct: 487 DKTIKVWDAVTGNKLHTFEGH 507
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 293 DKTLRLWDLAAGKTTRRFEDH 355
DKT+++WD G FE H
Sbjct: 487 DKTIKVWDAVTGNKLHTFEGH 507
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 269 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTK 361
NY S +D +++WD G+ ++ +H K
Sbjct: 779 NYLASTDYDGVVQIWDAGTGQGFSQYTEHQK 809
>At2g14340.1 68415.m01604 hypothetical protein
Length = 220
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 340 PGCLSSGKIPKPESFVPGTGKSVISITGQYNVRNEM 233
PG + S +P P F+PG GQ N+ +EM
Sbjct: 72 PGDMGSDFVPAPRDFIPGEVIWPGKFFGQTNLSDEM 107
>At1g79360.1 68414.m09248 transporter-related low similarity to
SP|O76082 Organic cation/carnitine transporter 2 (Solute
carrier family 22, member 5) (High-affinity
sodium-dependent carnitine cotransporter) {Homo
sapiens}; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 527
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 466 NSSASQRHKTLIFCLV*ALNTFSTLFLPKVKVLSHLSMV 350
+SS +++ + CLV A++T T+F P + V + L V
Sbjct: 136 DSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFV 174
>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein similar to SP|Q01780 Polymyositis/scleroderma
autoantigen 2 {Homo sapiens}; contains Pfam profiles
PF00570: HRDC domain, PF01612: 3'-5' exonuclease
Length = 738
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 303 SGFGILPLERQPGVSKTILRCDRTFTFGRNSVENVFSAYTRQKISV 440
SGFG+LPL+R+ KT++ + + E S+ + +K+ V
Sbjct: 566 SGFGVLPLKRKLESDKTVVEKNIEPKIEKTGTEASASSLSSKKVCV 611
>At5g40900.1 68418.m04966 expressed protein similar to GI:2827651,
GI:7527728, GI:4406788,GI:6063544, GI:10764853 from
[Arabidopsis thaliana]; expression supported by MPSS
Length = 248
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 532 DDCRLRMPRREHPHGFQHQYVPNSSASQRHKTLI 431
DD LR R HPH + H+Y S S + L+
Sbjct: 39 DDQALRYCLRAHPHCYLHRYSRKKSESLKPDGLV 72
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +2
Query: 98 TQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLPQKRLYGHSHFISDVVLSSDGNYA 277
T +A +P+ ++I D T+ ++ + DE + +L GH I+ + S+ N
Sbjct: 865 TFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEV-----KSKLKGHQKRITGLAFSTALNIL 919
Query: 278 LSGSWDKTLRLWDL 319
+S D + W +
Sbjct: 920 VSSGADAQICFWSI 933
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,956,578
Number of Sequences: 28952
Number of extensions: 273685
Number of successful extensions: 1439
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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