Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H09
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 33 0.18
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 33 0.18
U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical pr... 31 0.42
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 30 0.96
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical p... 28 5.1
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 9.0
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 27 9.0
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.0
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.0
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 427 TPEYNPVCGSDNKTYKNQGRL 489
T E+ VCGSD KTY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 403 KCAENCISTPEYNPVCGSDNKTYKNQ 480
KC+E C + VCG+D KTY N+
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNE 341
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 427 TPEYNPVCGSDNKTYKNQGRL 489
T E+ VCGSD KTY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 403 KCAENCISTPEYNPVCGSDNKTYKNQ 480
KC+E C + VCG+D KTY N+
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNE 349
>U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical
protein K02G10.5 protein.
Length = 655
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 397 IEKCAENCISTPEYNPVCGSDNK 465
+E C+ENC +NPVC D+K
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSK 464
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 332 KHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTKTREDYF 493
+ R++ + +H AL +H ++L +R A + CV+++IK + E F
Sbjct: 81 EQRHRRRRRHNETALEDHLSEKLSREKRAAAHIMRSRKCVISVIKKMSSMECSF 134
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 388 RQTIEKCAENCISTPEYNPVCGSDNKTYKN 477
R + + C NC +T E++PVC ++ Y+N
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRN 137
>Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical
protein F13G11.1b protein.
Length = 470
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 424 STPEYNPVCGSDNKTYKNQGRLFWCPKLWGKGFKVTLARQAP 549
S Y+P D + K +GR+ +C K G G KV L +P
Sbjct: 22 SNENYSP-SSQDMDSPKPKGRILYCRKCEGHGEKVILKNHSP 62
>Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical
protein F13G11.1a protein.
Length = 510
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 424 STPEYNPVCGSDNKTYKNQGRLFWCPKLWGKGFKVTLARQAP 549
S Y+P D + K +GR+ +C K G G KV L +P
Sbjct: 62 SNENYSP-SSQDMDSPKPKGRILYCRKCEGHGEKVILKNHSP 102
>Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 412 ENCISTPEYNPVCGSD-NKTYKN 477
+ + T EY P C SD KTYKN
Sbjct: 73 DGILETKEYKPACMSDAKKTYKN 95
>Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 412 ENCISTPEYNPVCGSD-NKTYKN 477
+ + T EY P C SD KTYKN
Sbjct: 73 DGILETKEYKPACMSDAKKTYKN 95
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -3
Query: 525 FEPFPPQFWAPK*SSLVFVSFIIATTHGVVFW 430
+ + P W P+ ++ + +SF+ + HG++F+
Sbjct: 2906 YTSYKPSHWNPRKATKISLSFLTFSPHGLLFF 2937
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -3
Query: 525 FEPFPPQFWAPK*SSLVFVSFIIATTHGVVFW 430
+ + P W P+ ++ + +SF+ + HG++F+
Sbjct: 2906 YTSYKPSHWNPRKATKISLSFLTFSPHGLLFF 2937
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -3
Query: 525 FEPFPPQFWAPK*SSLVFVSFIIATTHGVVFW 430
+ + P W P+ ++ + +SF+ + HG++F+
Sbjct: 720 YTSYKPSHWNPRKATKISLSFLTFSPHGLLFF 751
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -3
Query: 525 FEPFPPQFWAPK*SSLVFVSFIIATTHGVVFW 430
+ + P W P+ ++ + +SF+ + HG++F+
Sbjct: 2906 YTSYKPSHWNPRKATKISLSFLTFSPHGLLFF 2937
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -3
Query: 525 FEPFPPQFWAPK*SSLVFVSFIIATTHGVVFW 430
+ + P W P+ ++ + +SF+ + HG++F+
Sbjct: 2906 YTSYKPSHWNPRKATKISLSFLTFSPHGLLFF 2937
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,020
Number of Sequences: 27780
Number of extensions: 313513
Number of successful extensions: 824
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -