Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H06
         (487 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   2.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   5.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.9  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 106 NFTLQFPLKYKALIKTKSTPSKS 38
           N  L FP + K  + TKS+P  S
Sbjct: 210 NLGLDFPYQGKFEVPTKSSPRSS 232


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
          protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 47 IQITWCYYLIYSFV 6
          I  T C +LIYSFV
Sbjct: 44 IDPTLCTHLIYSFV 57


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 454  ISVSSSFKLLIFETILNLGI 395
            +S+ S + LLI  +I+NL +
Sbjct: 1037 LSIPSMYLLLILYSIINLNV 1056



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 167 ISYLVTFAVVKWAGL 123
           ++YLVTF +V  +G+
Sbjct: 73  VAYLVTFVIVLGSGV 87


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 454  ISVSSSFKLLIFETILNLGI 395
            +S+ S + LLI  +I+NL +
Sbjct: 1037 LSIPSMYLLLILYSIINLNV 1056



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 167 ISYLVTFAVVKWAGL 123
           ++YLVTF +V  +G+
Sbjct: 73  VAYLVTFVIVLGSGV 87


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 454  ISVSSSFKLLIFETILNLGI 395
            +S+ S + LLI  +I+NL +
Sbjct: 1037 LSIPSMYLLLILYSIINLNV 1056



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 167 ISYLVTFAVVKWAGL 123
           ++YLVTF +V  +G+
Sbjct: 73  VAYLVTFVIVLGSGV 87


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 454  ISVSSSFKLLIFETILNLGI 395
            +S+ S + LLI  +I+NL +
Sbjct: 1037 LSIPSMYLLLILYSIINLNV 1056



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 167 ISYLVTFAVVKWAGL 123
           ++YLVTF +V  +G+
Sbjct: 73  VAYLVTFVIVLGSGV 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,061
Number of Sequences: 336
Number of extensions: 2626
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)