Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H06
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   0.65 
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   3.5  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   4.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   6.1  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   6.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.1  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 179 HQIDISYLVTFAVVKWAGLRILVREFHPP 93
           HQ+     VTFA V W GL   +  + PP
Sbjct: 472 HQLKAISEVTFAFVSWRGLTYYMSNWEPP 500


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 15  IDEIVTPSDLDGVLLVLINALYFKGNWRVKFPY 113
           +D  +    L G ++ L NA YFKG+  +++ Y
Sbjct: 452 VDHSIIEVYLQGGIMCLTNAYYFKGDEPLQYYY 484


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 208 EVMLKVPVTYIKLTFPIWLPLLL*NG 131
           E +LK+P     L  PIW P+L+ NG
Sbjct: 216 ERVLKLPEMAHLLKDPIWQPILMPNG 241


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 66  INALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNV 170
           +++L+F  N  V      T+ SPF +S G QI  +
Sbjct: 174 VDSLFFLNNDSVAISGNFTEISPFSSSNGPQIAKL 208


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +3

Query: 291 TSTTVSSVIDNLKRVPLSSIFTLFAKH---TADEVIVQIPRFKIVSNINNLKELLTDMGL 461
           T  ++S V     +  +SSI  LF+KH    +D VIV   ++++VS ++ L  +   MG 
Sbjct: 479 TLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS-LSLLFTVFRTMGG 537

Query: 462 KTM 470
            T+
Sbjct: 538 STV 540


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 90  NWRVKFPYENTQSSPFYNSKGNQIGNVNLMY 182
           N+ +KFP++NT+ + +   K  +I N  L+Y
Sbjct: 275 NYVLKFPFDNTRGNEY--EKEQKIRNDELVY 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,512
Number of Sequences: 5004
Number of extensions: 41859
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)