Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H06
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    60   9e-10
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869     51   4e-07
11_02_0012 - 7346282-7347136,7347234-7347593                           51   6e-07
11_02_0011 - 7337618-7338496,7338596-7338991                           47   9e-06
11_01_0750 - 6315126-6315896,6316371-6316784                           46   2e-05
01_06_0824 - 32243495-32244319,32244449-32244859                       46   2e-05
11_02_0014 - 7352619-7352918,7353173-7353418                           45   3e-05
11_01_0767 + 6438648-6438809,6439146-6440000                           43   2e-04
04_04_0619 + 26652923-26653267,26653440-26654273                       39   0.002
11_01_0771 + 6453130-6454488                                           37   0.007
01_01_1152 + 9170628-9171899                                           36   0.013
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103...    28   3.5  

>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 6/165 (3%)
 Frame = +3

Query: 3   THEAIDEIVTPSDLD-GVLLVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLM 179
           T   I  I TP  ++    LVL NALYFKG W  KF    T+   F+   G  +     M
Sbjct: 477 TSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGESV-QAPFM 535

Query: 180 YVTGTFNMTSVDQMEARVLELPY---GDDNRYSMLLFLPYTSTTVSSVIDNLKRVP--LS 344
                  ++S D +  +VL+LPY   GD  ++SM + LP     + S+ + L   P  + 
Sbjct: 536 STRKKQYLSSYDSL--KVLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEPEFME 593

Query: 345 SIFTLFAKHTADEVIVQIPRFKIVSNINNLKELLTDMGLKTMFDS 479
           +   +   H       ++P+FKI         LL  +GL  +F S
Sbjct: 594 NHIPMRPVHVGQ---FKLPKFKISFGF-GASGLLKGLGLPLLFGS 634



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 51/167 (30%), Positives = 73/167 (43%), Gaps = 8/167 (4%)
 Frame = +3

Query: 3   THEAIDEIVTPSDLDGVL-LVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLM 179
           T   I EI+ P  +D    LVL NALYFKG W  KF    T+   F+   G  +     M
Sbjct: 225 TSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKSV-QAPFM 283

Query: 180 YVTGTFNMTSVDQMEARVLELPY---GDDNRYSMLLFLPYTSTTVSSVIDNLKRVPLSSI 350
             +    + S D +  +VL+LPY   GD  ++SM + LP     + S+ + L   P    
Sbjct: 284 STSKKQYILSYDNL--KVLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEP---- 337

Query: 351 FTLFAKHTADEVIV----QIPRFKIVSNINNLKELLTDMGLKTMFDS 479
                KH     +     ++P+FKI        +LL  +GL   F S
Sbjct: 338 -EFLEKHIPTRQVTVGQFKLPKFKISFGF-EASDLLKSLGLHLPFSS 382


>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
          Length = 258

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
 Frame = +3

Query: 3   THEAIDEIVTPSDLDGVL-LVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLM 179
           T   I EI+ P  +D    LVL NALYFKG W  KF    T+   F    G  +     M
Sbjct: 17  TSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKSV-LAPFM 75

Query: 180 YVTGTFNMTSVDQMEARVLELPY--GDDNR-YSMLLFLPYTSTTVSSVIDNLKRVPLSSI 350
             +    ++S D +  +VL+LPY  G D R +SM + LP     + S+   L   P   +
Sbjct: 76  STSKKQYLSSYDSL--KVLKLPYQKGRDLRQFSMYILLPEAQDGLWSLAAKLNSEP-EFL 132

Query: 351 FTLFAKHTADEVIVQIPRFKIVSNINNLKELLTDMGLKTMFDS 479
                         ++P+FKI        +LL  +GL+  F S
Sbjct: 133 EKRIPTRQVTVGKFKLPKFKISFGF-EASDLLKILGLQLPFSS 174


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
 Frame = +3

Query: 3   THEAIDEIVTPSDLDG-VLLVLINALYFKGNWRVKFPYENTQS------------SPFYN 143
           T++ I EI+    + G   LVL+NA+YFKG W   FP E T +            +PF +
Sbjct: 136 TNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMS 195

Query: 144 SKGNQ-IG------NVNLMYVTGTFNMTSVDQMEARVLELPYGDDNRYSMLLFLPYTSTT 302
           S+ +Q IG       + L Y     N      +   +L+  YG++   SM +FLP     
Sbjct: 196 SREDQYIGFYDGFKVLKLPYHRTMKNHGDGGDITPAILK-HYGENVGLSMYIFLPDARDG 254

Query: 303 VSSVIDNLKRVPLSSIFTLFAK-HTADEVIV-----QIPRFKIVSNINNLKELLTDMGLK 464
           + +++D +      +  + F + H      +     ++PRFK VS  + + E+L  MG+ 
Sbjct: 255 LPALVDKMAVASSGTASSSFLRDHRPGRRRIKVGDLRVPRFK-VSFYSEMNEVLKGMGIG 313

Query: 465 TMFDSGR 485
             FD G+
Sbjct: 314 AAFDVGK 320


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 29/189 (15%)
 Frame = +3

Query: 3   THEAIDEIVTPSDLD-GVLLVLINALYFKGNWRVKFPYENTQSS------------PFYN 143
           T++ I EI+    +     LVL+NA+YFKG W   FP  +T +             PF +
Sbjct: 148 TNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMS 207

Query: 144 SKGNQ-IGN------VNLMYVTGTFNM------TSVDQMEARVLELPYGDDN-RYSMLLF 281
           S+ +Q IG       + L Y   T         T  +    R +   YG +N   SM +F
Sbjct: 208 SREDQYIGFHDGFTVLKLPYHHRTMKNHGDGGDTITNSSITRAILEHYGGENVGLSMYIF 267

Query: 282 LPYTSTTVSSVIDNLKRVPLSSIFTLFAKHTADEVI--VQIPRFKIVSNINNLKELLTDM 455
           LP     + +++D +     SS F    + T    +  +++PRFK VS  + +  +L  M
Sbjct: 268 LPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFK-VSFYSQINGVLQGM 326

Query: 456 GLKTMFDSG 482
           G+   FD+G
Sbjct: 327 GVTAAFDAG 335


>11_01_0750 - 6315126-6315896,6316371-6316784
          Length = 394

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
 Frame = +3

Query: 57  LVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLMYVTGTFNMTSVDQMEARVL 236
           LVL +ALYF+G W  +     T    FY   G    +V + +V              +V+
Sbjct: 173 LVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGT---SVEVPFVEYDRTRLFAVHDNFKVI 229

Query: 237 ELPY---GDDNRYSMLLFLPYTSTTVSSVIDNLKRVPLSSIFTLFAKHTADE---VIVQI 398
           +LPY    ++ ++SM +FLP     +  +   +   P+        +H   E   V + +
Sbjct: 230 KLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPM-----FLEQHLPTEKCHVGISV 284

Query: 399 PRFKIVSNINNLKELLTDMGLKTMF 473
           P FKI   I ++K+ L DMGL+  F
Sbjct: 285 PNFKISFQI-DVKDFLKDMGLELPF 308


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
 Frame = +3

Query: 60  VLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLMYVTGTFNMTSVDQMEARVLE 239
           VL NALYFKG+W  KF   +T    FY   G   G+V+  +++         +   +VL 
Sbjct: 173 VLGNALYFKGDWESKFDARSTSDDVFYLPDG---GHVSAPFMSSGKWQYIACRAGYKVLR 229

Query: 240 LPYGDDNR---------YSMLLFLPYTSTTVSSVIDNLKRVPLSSIFTLFAKHTADEV-I 389
           LPY    R         +SM ++LP     +  ++  L   P + I +  A      V  
Sbjct: 230 LPYARGGRGRGRDTGRLFSMYIYLPDERHGLPDMLRKLCSDPAALIESSAALTEKVPVGA 289

Query: 390 VQIPRFKIVSNINNLKELLTDMGLKTMFD 476
             +PRF + S   N  E L  +GL+  F+
Sbjct: 290 FMVPRFTL-SYKTNAAETLRQLGLRLPFE 317


>11_02_0014 - 7352619-7352918,7353173-7353418
          Length = 181

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +3

Query: 3   THEAIDEIVTPSDLDGVL-LVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLM 179
           T++ I EI+    +  +  LVL+NA+YFKG W   FP E+T +  F+   G+ + NV  M
Sbjct: 98  TNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLDGSSV-NVRFM 156

Query: 180 YVTGTFNMTSVDQMEARVLELPY 248
                  +   D     VL+LPY
Sbjct: 157 RSREDQYIGFYDGF--NVLKLPY 177


>11_01_0767 + 6438648-6438809,6439146-6440000
          Length = 338

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
 Frame = +3

Query: 3   THEAIDEIVTP-SDLDGVLLVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLM 179
           T   I E++ P S       V+ NA+YFKG W   F   +T    F    G+ +    + 
Sbjct: 70  TKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGSSVEVPFMQ 129

Query: 180 YVTGTFNMTSVDQMEARVLELPYGDDN-------RYS-----MLLFLPYTSTTVSSVIDN 323
             +G+++  +      RVL LPY   +       RYS     ML+FLP     +  ++D 
Sbjct: 130 RPSGSYHHVACHD-GFRVLRLPYKATSDTYNLKLRYSLPSFAMLVFLPDDRDGLPGLLDR 188

Query: 324 LKRVPLSSIFTLFAKHTADEVIVQIPRFKIVSNINNLKELLTDMGLKTMFD 476
           +   P   +              ++P+FK+      + ++L  +GL+  FD
Sbjct: 189 ITASP-EFVDEHLPPGCVPVGRFRVPKFKLAFCHYGIADVLRGLGLRLPFD 238


>04_04_0619 + 26652923-26653267,26653440-26654273
          Length = 392

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
 Frame = +3

Query: 3   THEAIDEIVTPSDL-DGVLLVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLM 179
           T+  ++  ++P         VL NA++FK  W  KF   +TQ   F+   G ++  V  +
Sbjct: 131 TNGRLNNTISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQDGTRV-TVPFL 189

Query: 180 YVTGTFNMTSVDQMEARVLELPY---GDDNR-------YSMLLFLPYTSTTVSSVIDNLK 329
               T      D +  +VL+L Y   G D +       + ML+FLP     +  ++    
Sbjct: 190 SDPRTHYAARFDGLGFKVLQLFYKMVGHDGQVHFGAPCFCMLVFLPIKRDGLRHLLRMAV 249

Query: 330 RVPLSSIFTLFAKHTADEVIVQIPRFKIVSNINNLKELLTDMGLKTMFD 476
             P   +     +   +     +P+FK  S + + +  L  +GL   FD
Sbjct: 250 TEP-DFVMRCVPRSEQEVSPCMVPKFKFSSEL-DARGALAKLGLGAPFD 296


>11_01_0771 + 6453130-6454488
          Length = 452

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 3   THEAIDEIVTPSDLDG-VLLVLINALYFKGNWRVKFPYENTQSSPFYNSKG 152
           T + I +++ P  +     +VL NA+YFKG W   F   +T+  PFY   G
Sbjct: 185 TGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKPFYRHDG 235


>01_01_1152 + 9170628-9171899
          Length = 423

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 3   THEAIDEIVTPSDLDG-VLLVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQI 161
           T   I +++ P+ +D   ++VL NA++FKG W + F    T  +PF+   G  +
Sbjct: 171 TEGLIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAV 224


>12_02_0979 -
           25009721-25009975,25010058-25010127,25010216-25010381,
           25010501-25010651,25010843-25010890,25011172-25011225,
           25011400-25011513,25012666-25012782,25012899-25012991,
           25013085-25013123,25013990-25014055
          Length = 390

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 165 FLFGYLCCCKMGWIAYSR 112
           FL   LCCCK+GW +  R
Sbjct: 26  FLLWGLCCCKIGWDSVMR 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,492
Number of Sequences: 37544
Number of extensions: 242052
Number of successful extensions: 484
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)