Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H06
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 87 7e-18
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 73 2e-13
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 64 6e-11
SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_28412| Best HMM Match : C1_1 (HMM E-Value=5.5e-17) 28 3.6
SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 28 4.7
SB_40806| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 87.0 bits (206), Expect = 7e-18
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Frame = +3
Query: 3 THEAIDEIVTPSDLDGVL-LVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLM 179
T + I +++ P + + L L+NA+YFKG W F E++ SS F + N++ V +M
Sbjct: 104 TKKKICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEV-EVEMM 162
Query: 180 YVTGTFNMTSVDQMEARVLELPYGDDNRYSMLLFLPYTSTTVSSVIDNLKRVPLSSIFTL 359
+ F D+ + ++LELPY D + SM+L LP + ++ +L ++ IF
Sbjct: 163 FQKSKFKYLHSDKYKCKLLELPY-VDTQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNS 221
Query: 360 FAKHTADEVIVQIPRFKIVSNINNLKELLTDMGLKTMFD 476
+ +V V IP+FK+ S L E L ++G+K MFD
Sbjct: 222 VSSQRPADVEVYIPKFKMTSEF-KLNEALQELGMKKMFD 259
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/144 (29%), Positives = 68/144 (47%)
Frame = +3
Query: 54 LLVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLMYVTGTFNMTSVDQMEARV 233
+L L+NA+YFKG+W F TQS F + +I V MY + F + ++
Sbjct: 159 ILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEI-QVQFMYQSSEFRYLESSTLGCQI 217
Query: 234 LELPYGDDNRYSMLLFLPYTSTTVSSVIDNLKRVPLSSIFTLFAKHTADEVIVQIPRFKI 413
+ELPY + + SM++ LP + + +L + L T +EV V +P+F +
Sbjct: 218 VELPYAGE-KLSMVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSHPEEVEVTLPKFTL 276
Query: 414 VSNINNLKELLTDMGLKTMFDSGR 485
+L E L MG +F G+
Sbjct: 277 TQEF-SLGETLKGMGASDLFSPGK 299
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 64.1 bits (149), Expect = 6e-11
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Frame = +3
Query: 57 LVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIG-NVNLMYVTGTFNMTSVDQMEARV 233
L+++NA+YFKG W+ +F ENT + F+ + ++ V +M N ++ RV
Sbjct: 128 LIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVNFYYDADIKCRV 187
Query: 234 LELPY-GDDNRYSMLLFLPYTSTTVSSVIDNLKRVPLSSIFTLFAKHTADEVIVQIPRFK 410
+ELPY GDD +M++ LP + + S+ ++ + L T + V IP+F+
Sbjct: 188 VELPYSGDDT--AMVIILPEEPSGIFSLEKSIDVEIMEKWRRLMINTTVE---VSIPKFR 242
Query: 411 IVSNINNLKELLTDMGLKTMFDS 479
+ + L+ LL D+G+ +FDS
Sbjct: 243 LSQKL-ELRSLLQDLGVSDIFDS 264
>SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 244 LTAMTTGIRCCFSCHIRVPPCQVLLTT*NVC 336
L+A+ T + C S + +P C+VLL+ +C
Sbjct: 427 LSAIMTAVTCTTSLSMGIPDCEVLLSAYKIC 457
>SB_28412| Best HMM Match : C1_1 (HMM E-Value=5.5e-17)
Length = 490
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -1
Query: 238 SNTLASIWSTEVMLKVPVTYIKLTFPIWLPLLL*NGLDC 122
S +LAS+W ++ L+V ++ F WLPLLL G+ C
Sbjct: 45 SPSLASMW--KLTLRVLFNLLEGFFENWLPLLLEVGIIC 81
>SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 66 INALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLMYVTGTFNMTSVDQMEAR 230
+ AL+F GN PY + + + N IGN+ YVT F D R
Sbjct: 526 VRALHFYGN--TPGPYRSFAKEIYGELRRNLIGNIYRQYVTSGFVWEQYDDGTGR 578
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 39 DLDGVLLVLINALYFKGNWRVKFPYENTQSSPFYNSKGNQIGNVNLMYVTGTFNM--TSV 212
D G++ N L F+G P Q P+Y NQ+ N N Y+ N ++
Sbjct: 408 DEPGLVTRFFNYLGFEGEQ----PQSPPQPQPYYPGDDNQVTNNNFEYIYDQVNQLTENI 463
Query: 213 DQMEARVLEL 242
+ E R +E+
Sbjct: 464 NTSEKRSVEM 473
>SB_40806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = -1
Query: 328 FRLSITLDTVVLVYGRKSNIEY---LLSSP*GSSNTLASIWST-EVMLKVPVTYIKLTFP 161
F I L +V +Y R S + + +P +S + S+ T + ++K+ +T I L F
Sbjct: 191 FGYVIPLVVLVALYARISCVVWKRDTSKNPLRTSRSFESVLKTRKKVVKMFLTVILLFFV 250
Query: 160 IWLPLLL 140
W+PLLL
Sbjct: 251 TWIPLLL 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,006
Number of Sequences: 59808
Number of extensions: 299361
Number of successful extensions: 688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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