Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H04
         (122 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    24   2.4  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    24   3.2  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    23   7.4  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    23   7.4  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    22   9.7  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    22   9.7  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    22   9.7  

>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 59  TPTAHATNPLRHTPQRCPPPP 121
           T T H+ +    TP   PPPP
Sbjct: 52  TDTTHSRHRYPETPPSLPPPP 72


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 65  WVYVCVCFCVCGSCTLLLSPF 3
           WVY C+ F     C L+ +P+
Sbjct: 345 WVYACIFFLTRVFCFLIDTPY 365


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
          Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 34 QTQKHTQTYTHGTRHQPSTAH 96
          QT K       GTRH PS +H
Sbjct: 36 QTNKFYGNLYIGTRHNPSWSH 56


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 73  RHQPSTAHATTLPPP 117
           R+ PS+  +TTLP P
Sbjct: 416 RNNPSSGESTTLPQP 430


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 1   EKGDRRRVQLPQTQKHTQTYTHGTRHQPSTAHATT 105
           E   + R  LP+ QK  +     T   PS+  +TT
Sbjct: 88  ESQQKDRKNLPRNQKSNEIQEKQTFQTPSSEKSTT 122


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 116 GGGSVVACAVEGWW 75
           GG   V C V+ WW
Sbjct: 346 GGYDGVTCGVQWWW 359


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 62  PTAHATNPLRHTPQ 103
           P + AT PL H+PQ
Sbjct: 325 PPSSATGPLYHSPQ 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.125    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,450
Number of Sequences: 5004
Number of extensions: 7005
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)