Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H04
(122 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0452 + 23044190-23045227 33 0.032
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 0.92
02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719... 27 1.6
04_03_0904 + 20717005-20718087 26 3.7
01_05_0490 + 22672241-22674679 26 3.7
07_03_0600 + 19866757-19867218,19867920-19868429 26 4.9
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151... 26 4.9
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 25 6.5
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 25 6.5
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 25 6.5
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281... 25 6.5
06_03_0905 + 25843547-25844314 25 8.6
06_03_0721 - 23861426-23861929,23862013-23862219,23862598-238628... 25 8.6
05_03_0601 - 16043516-16044037 25 8.6
01_06_1214 + 35470688-35471340,35471617-35471701,35471750-354719... 25 8.6
01_06_1106 + 34563368-34563679 25 8.6
>02_04_0452 + 23044190-23045227
Length = 345
Score = 33.1 bits (72), Expect = 0.032
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 46 HTQTYTHGTRHQPSTAHATTLPPPP 120
H+ +++H H PST T+ PPPP
Sbjct: 182 HSHSHSHSRAHNPSTRPPTSAPPPP 206
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 28.3 bits (60), Expect = 0.92
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +1
Query: 7 GDRRRVQLPQTQKHTQTYTHGTRHQPSTAHATTLPPPP 120
G RRR Q H Q HG HQPS+ PPPP
Sbjct: 14 GHRRRGSAAQGHGHHQV--HGHHHQPSSPPP---PPPP 46
>02_05_1289 -
35470076-35470243,35471032-35471108,35471935-35471971,
35472559-35472618,35472693-35472769,35473244-35473364,
35473505-35473597,35473708-35473770,35475195-35475245,
35475384-35475511,35476249-35476343,35476345-35476427,
35476653-35476808,35477046-35477182,35477243-35477252,
35477291-35477380,35477771-35478070,35479054-35479120,
35479382-35479469,35480317-35480373,35480469-35480592
Length = 693
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 116 GGGSVVACAVEGWWRVPWVYVCVCFCVCGSCTLLLSPF 3
G G+ V GWW VPW +CV V S T S F
Sbjct: 86 GRGAKAQLLVLGWWDVPW-NLCV-LVVSKSPTAFTSAF 121
>04_03_0904 + 20717005-20718087
Length = 360
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 59 TPTAHATNPLRHTPQRCPPPP 121
TP AH P +TP PP P
Sbjct: 101 TPPAHTPTPPTYTPTPTPPKP 121
>01_05_0490 + 22672241-22674679
Length = 812
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 65 TAHATNPLRHTPQRCPPPP 121
T TNP P+R PPPP
Sbjct: 593 TVRTTNPAPAPPRRPPPPP 611
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 75 PPTLYGTRHNAAPPPR 122
PPT+ G H A PPP+
Sbjct: 6 PPTMNGGHHAAPPPPQ 21
>06_03_0107 +
16709543-16709640,16712555-16713408,16715051-16715193,
16715312-16715573,16715835-16716150,16716257-16716383,
16717088-16717149,16717291-16717374,16717438-16717494,
16717705-16717768,16718057-16718152
Length = 720
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 13 RRRVQLPQTQKHTQTYTHGTRHQPSTAHATTLP 111
+R+ + Q Q + + H TR QP + T+P
Sbjct: 397 KRKTNIYQCQNYILQFKHDTRIQPLESRGLTIP 429
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 22 VQLPQTQKHTQTYTHGTRHQPSTAHATTLPPPP 120
V + QT ++ T+TH R P A PPP
Sbjct: 682 VHMTQTPHNSPTHTHSYRVTPPRAVYMHAKPPP 714
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 7 GDRRRVQLPQTQKHTQTYTHGTRHQPSTAHATTLPPPP 120
G+ V +P H + H H P+ H PPPP
Sbjct: 2 GEETLVAMPLAPPH---HHHHHAHLPALPHLAAPPPPP 36
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 79 QPSTAHATTLPPPP 120
+PST TT PPPP
Sbjct: 89 EPSTTTTTTTPPPP 102
>04_01_0223 +
2813129-2814014,2815928-2816309,2816358-2816459,
2816727-2817249
Length = 630
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 76 HQPSTAHATTLPPPP 120
H + A ATTLPPPP
Sbjct: 29 HHCTEAAATTLPPPP 43
>06_03_0905 + 25843547-25844314
Length = 255
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 62 PTAHATNPLRHTPQRCPPPP 121
PT T P T CPPPP
Sbjct: 147 PTPPVTYPTPPTTTPCPPPP 166
>06_03_0721 -
23861426-23861929,23862013-23862219,23862598-23862852,
23862858-23863212,23863533-23863834,23864006-23864281,
23864854-23865167,23865411-23865683,23865831-23866415,
23866806-23867132,23867270-23867337,23868670-23868746
Length = 1180
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = -1
Query: 113 GGSVVACAVEGW------WRVPWVYVCVCFCVCGSCTLLLSP 6
G SVV C+V GW W V Y +C SC+L SP
Sbjct: 3 GCSVVQCSVRGWQLMGTGWAVLAGYSTSNVAIC-SCSLNRSP 43
>05_03_0601 - 16043516-16044037
Length = 173
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 119 GGGGSVVACAVEGWWR 72
GG VVA ++ WWR
Sbjct: 123 GGSAEVVAWGIDKWWR 138
>01_06_1214 +
35470688-35471340,35471617-35471701,35471750-35471906,
35472086-35472189
Length = 332
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = +1
Query: 64 HGTRH--QPSTAHATTLPPPP 120
HG RH PS A++ PPPP
Sbjct: 23 HGRRHGHHPSRLLASSAPPPP 43
>01_06_1106 + 34563368-34563679
Length = 103
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +2
Query: 62 PTAHATNP--LRHTPQRCPPPP 121
P+A A P LRH P RC PP
Sbjct: 40 PSASAPPPAELRHGPNRCRRPP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.125 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,833,860
Number of Sequences: 37544
Number of extensions: 74592
Number of successful extensions: 404
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 21
effective length of database: 14,004,924
effective search space used: 266093556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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