Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H04
         (122 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.44 
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.0  
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 27   2.4  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     27   2.4  
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)               24   3.6  
SB_11219| Best HMM Match : PADR1 (HMM E-Value=2)                       26   4.1  
SB_46502| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 26   5.5  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)                  25   9.5  
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       25   9.5  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_50584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 13  RRRVQLPQTQKHTQTYTHGTRHQPSTAHAT 102
           R  +  P   +HT T TH  RH  +T H T
Sbjct: 28  RHTITTPHNIRHTTTTTHNIRHTITTPHNT 57



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 13  RRRVQLPQTQKHTQTYTHGTRHQPSTAH 96
           R  +  P   +HT T  H  RH  +T H
Sbjct: 48  RHTITTPHNTRHTITTPHNKRHTTTTPH 75


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = +1

Query: 31  PQTQKHTQTYT-HGTRHQPSTAHATTLPPPP 120
           PQT+  +Q  + +G+  +PST++ T++PPPP
Sbjct: 719 PQTESMSQAISLNGSFQRPSTSN-TSVPPPP 748


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 4    KGDRRRVQLPQTQKHTQT 57
            +G+RRR + PQT+ H QT
Sbjct: 1203 QGERRRFRTPQTKAHIQT 1220


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +1

Query: 25  QLPQTQKHTQTYTHGTR--HQPSTAHATTLPPPP 120
           Q   T  H  T TH T   H  S  HAT+  P P
Sbjct: 47  QATTTNTHATTNTHATSNTHATSNTHATSNTPKP 80


>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 23.8 bits (49), Expect(2) = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 53  CVCFCVCG 30
           CVC CVCG
Sbjct: 85  CVCVCVCG 92



 Score = 21.0 bits (42), Expect(2) = 3.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 56  VCVCFCVC 33
           VC C CVC
Sbjct: 80  VCACTCVC 87


>SB_11219| Best HMM Match : PADR1 (HMM E-Value=2)
          Length = 543

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 95  CAVEGWWRVPWVYVCVCF 42
           CAV   +R PW   C CF
Sbjct: 403 CAVLSLYRQPWSEACACF 420


>SB_46502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 54  NIHPRHTPPTLYGTRHN 104
           NIHP   PPTLYG+ H+
Sbjct: 81  NIHP---PPTLYGSLHH 94


>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 666

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -1

Query: 71  VPWVYVCVCFCV--CGSCTLLLSP 6
           V W+  CVC  V  CG  +LL SP
Sbjct: 238 VTWMPYCVCVFVSLCGGASLLRSP 261


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 10   DRRRVQLPQTQKHTQTYTHG-TRHQP--STAHATTLPPPP 120
            +RRR  +P T   +     G TR  P  ST+   + PPPP
Sbjct: 895  NRRRAPIPNTGSESSRGDSGSTRTSPIRSTSTIPSTPPPP 934


>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 59  TPTAHATNPLRHTPQRCPPPP 121
           TP A  T+PLR   Q  PPPP
Sbjct: 207 TPYASKTHPLRR--QNTPPPP 225


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 16  RRVQLPQTQKHTQTYTHGTRH-QPSTAHATTLPPPP 120
           +RV LP+T      Y+  T H +PS    T  P  P
Sbjct: 639 QRVPLPETHHQRVPYSRATHHGEPSPRIPTVTPRVP 674


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 74  RVPWVYVCVCF 42
           +VPWVYV +CF
Sbjct: 483 KVPWVYVGMCF 493


>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 66   RHTPPTLYGTRHNAAPPPR 122
            R  PP  Y + H   PPPR
Sbjct: 1011 RFPPPVSYPSGHRVPPPPR 1029


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 59  YVCVCFCVCGSCTLLL 12
           Y+C C C C SC +++
Sbjct: 433 YLCCCRCFCRSCCVVV 448


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 67   GTRHQPSTAHATTLPPPP 120
            G+RHQP  +   + PPPP
Sbjct: 1421 GSRHQPPPSVDMSQPPPP 1438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.125    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,795,381
Number of Sequences: 59808
Number of extensions: 70261
Number of successful extensions: 353
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 21
effective length of database: 15,565,489
effective search space used: 295744291
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)