Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_H04
(122 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 26 4.0
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 25 7.0
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp... 25 7.0
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp... 25 7.0
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp... 25 7.0
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas... 25 7.0
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,... 25 7.0
At2g45010.2 68415.m05605 expressed protein weak similarity to PG... 25 7.0
At2g45010.1 68415.m05604 expressed protein weak similarity to PG... 25 7.0
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 25 7.0
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 25 9.3
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami... 25 9.3
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 25 9.3
At2g34880.1 68415.m04282 transcription factor jumonji (jmj) fami... 25 9.3
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 60 HPRHTPPTLYGTRHNAAPPPR 122
HP H PP Y PPP+
Sbjct: 18 HPHHNPPYYYSDPPPQQPPPQ 38
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 60 HPRHTPPTLYGTRHNAAPPP 119
HP PP+ Y H PPP
Sbjct: 62 HPHPPPPSPYPHPHQPPPPP 81
>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 54 NIHPRHTPPTLYGTRHNAAPPP 119
++ P H PP G +A PPP
Sbjct: 98 HLPPHHLPPPFPGPYDSAPPPP 119
>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 54 NIHPRHTPPTLYGTRHNAAPPP 119
++ P H PP G +A PPP
Sbjct: 98 HLPPHHLPPPFPGPYDSAPPPP 119
>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 54 NIHPRHTPPTLYGTRHNAAPPP 119
++ P H PP G +A PPP
Sbjct: 98 HLPPHHLPPPFPGPYDSAPPPP 119
>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
reticulum-type (ECA2) nearly identical to SP|O23087
Calcium-transporting ATPase 2, endoplasmic reticulum-type
(EC 3.6.3.8) {Arabidopsis thaliana}; contains InterPro
Accession IPR006069: Cation transporting ATPase
Length = 1054
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 77 WRVPWVYVCVCFCVCGSCTLLLSPF 3
WR PW+ V + C +L PF
Sbjct: 980 WRNPWLLVAMTVSFALHCVILYVPF 1004
>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 513
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = +1
Query: 31 PQTQKHTQTYTHGTRHQPSTAHATT----LPPPP 120
P+ Q H Q+Y +T ++T LPPPP
Sbjct: 394 PKLQNHDQSYLSPHHQNTATTSSSTPPQPLPPPP 427
>At2g45010.2 68415.m05605 expressed protein weak similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 198
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 71 VPWVYVCVCFCVC 33
+PW CVC VC
Sbjct: 52 IPWTQPCVCHAVC 64
>At2g45010.1 68415.m05604 expressed protein weak similarity to
PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
profile PF04749: Protein of unknown function, DUF614
Length = 244
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 71 VPWVYVCVCFCVC 33
+PW CVC VC
Sbjct: 98 IPWTQPCVCHAVC 110
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 122 PGGGGSVVACAVEGWWRVPWVYVCVCF 42
PG S C + G VPW+YV +CF
Sbjct: 276 PGSVLSFEDCDISGVL-VPWLYVGMCF 301
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 22 VQLPQTQKHTQTYTHGTRHQPSTAHATTLPPPP 120
V P KH +T +HQ + A A L PP
Sbjct: 126 VPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPP 158
>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 954
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 122 PGGGGSVVACAVEGWWRVPWVYVCVCF 42
PG + +C + G VPW+YV +CF
Sbjct: 278 PGSVLAFESCDISGVI-VPWLYVGMCF 303
>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1006
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 10 DRRRVQLPQTQKHTQTYTHGTRHQPSTAHA 99
+R V QTQK++ Y+ G+ P T H+
Sbjct: 20 NRYGVDGSQTQKYSYQYSTGSESAPWTGHS 49
>At2g34880.1 68415.m04282 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains Pfam domains, PF02375: jmjN domain, PF02373:
jmjC domain and PF02928: C5HC2 zinc finger
Length = 806
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 95 CAVEGWWRVPWVYVCVCF 42
C + G +VPW+YV +CF
Sbjct: 285 CEISGV-QVPWLYVGMCF 301
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.125 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,962
Number of Sequences: 28952
Number of extensions: 45441
Number of successful extensions: 213
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,070,560
effective HSP length: 21
effective length of database: 11,462,568
effective search space used: 217788792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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