Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H03
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133...    30   1.2  
03_06_0604 - 35006004-35008580                                         29   2.2  
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405...    29   2.8  
12_02_0808 - 23347167-23347205,23347361-23347439,23348555-233487...    28   5.0  
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124...    27   8.7  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    27   8.7  

>10_06_0085 +
           10511258-10512327,10512978-10513058,10513318-10513396,
           10514160-10514201
          Length = 423

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 413 PETFSVCCGPPPEINPEDMTLNERCSRAVTA 505
           P ++   C   PE+   D  L  R SRA+TA
Sbjct: 30  PGSYEAACSADPELGTFDTALRRRASRAITA 60


>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +2

Query: 233 CGYENNIPMVCCPISN-ACKTPDDKPGIC---VGLYNCE-HITYMMLDKTR 370
           CGY    P+  CP  N     P D  G C   + L NC  + T + LD T+
Sbjct: 291 CGYNGTSPVCRCPSENFQLSNPADPRGGCRRKIELQNCPGNSTMLQLDNTQ 341


>04_04_0415 +
           25038826-25038835,25039333-25039964,25040484-25040561,
           25040588-25040833,25041598-25041684,25041860-25042024
          Length = 405

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 122 RNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDD 301
           R  +GN  S Y CE +L LFR         +++G   C     +P         C  PDD
Sbjct: 145 RELAGNGASAYLCEDVLGLFRKFHYFVRPSRIVGVGTCA----LPEAWIVGVGTCVLPDD 200


>12_02_0808 -
           23347167-23347205,23347361-23347439,23348555-23348718,
           23348838-23349056
          Length = 166

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 29  INSNKMIIFSTVSYILLISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAED 208
           + S + ++  T  Y+L I+ NL+   +C+     + NC  L  C P    F  K      
Sbjct: 103 MGSRRALVLGTSGYLLFIAANLV--PSCSEHALPTANC-RLPSCRPEAAAFCTKKMRHLT 159

Query: 209 KKL 217
           KK+
Sbjct: 160 KKI 162


>03_05_0478 -
           24712157-24712177,24712206-24712260,24712377-24712473,
           24712558-24713302,24713822-24714189,24714279-24714419,
           24715480-24715849
          Length = 598

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 440 PPPEINPEDMTLNERCSRAVTAFPLESNN 526
           P P  +P ++  +E  SRA +A  LESNN
Sbjct: 99  PSPAASPSELGDDESWSRAPSAAELESNN 127


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -3

Query: 582 VSFPPTI*LTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQ 403
           V+ P +I   TVS       +  +  AV A + +  +  + G  S G P H  N+SGPL 
Sbjct: 577 VAEPQSIPAPTVSVRTTGGHVRGNVAAVKAAQIVPTQC-TDGLRSFGSPHHFTNLSGPLT 635

Query: 402 T 400
           T
Sbjct: 636 T 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,525
Number of Sequences: 37544
Number of extensions: 296039
Number of successful extensions: 656
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)