Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H02
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   248   4e-67
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   244   7e-66
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    29   0.46 
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    27   3.3  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   7.6  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  248 bits (608), Expect = 4e-67
 Identities = 122/171 (71%), Positives = 134/171 (78%)
 Frame = +1

Query: 124 TTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAK 303
           TT + ASAHL GGAK+VIISAPS DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAK
Sbjct: 103 TTKETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAK 162

Query: 304 VIHDNFEIIEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIP 483
           VI+D F I EGLM             DGPS K WR GRGA  NIIP+STGAAKAVGKVIP
Sbjct: 163 VINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIP 222

Query: 484 QLNGKLTGMAFRVPVAXVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGI 636
            LNGKLTGMAFRVP   VSVVDLTV+L KP +YE IK  +K A+EGP+KG+
Sbjct: 223 ALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGV 273



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 11  GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGV 121
           G LV++G  I V +ERDP  I W  +GAEYV+ESTGV
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGV 101



 Score = 29.1 bits (62), Expect = 0.61
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 627 EGHLGYTEDQVVSSDF 674
           +G LGYTED VVS+DF
Sbjct: 271 KGVLGYTEDSVVSTDF 286


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  244 bits (598), Expect = 7e-66
 Identities = 120/171 (70%), Positives = 133/171 (77%)
 Frame = +1

Query: 124 TTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAK 303
           TT + ASAHL GGAK+VIISAPS DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAK
Sbjct: 103 TTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAK 162

Query: 304 VIHDNFEIIEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIP 483
           VI+D F I EGLM             DGPS K WR GRGA  NIIP+STGAAKAVGKVIP
Sbjct: 163 VINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIP 222

Query: 484 QLNGKLTGMAFRVPVAXVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGI 636
            LNGKLTGMAFRVP   VSVVDLTV+L KP +YE IK  +K A+EGP+KG+
Sbjct: 223 ALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGV 273



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +2

Query: 8   DGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGV 121
           DG LV++G  I V +ERDP  I W  +GA+YV+ESTGV
Sbjct: 64  DGKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGV 101



 Score = 28.7 bits (61), Expect = 0.81
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 627 EGHLGYTEDQVVSSDF 674
           +G LGYTED VVS+DF
Sbjct: 271 KGVLGYTEDAVVSTDF 286


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 163 LHPPSE-QKLYQWL*HTG*FNNVFSTSLTPWNSMGIP 56
           LHPPS  QK + W+ H G    VF  SL   N+ G P
Sbjct: 287 LHPPSSAQKNWSWIKHVG---KVFCCSLPGNNASGTP 320


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 568 KPASYEAIKQKVKEAAEGPLKGIWDTLKTRSSP 666
           +P+S E I QK+    + P   +W  +  RS+P
Sbjct: 262 EPSSSEEIYQKLANEVDVPHAALWTWMSQRSNP 294


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +3

Query: 366 HPEDC*WTFWKTVARW 413
           +P+D  W +W++++ W
Sbjct: 91  NPKDVFWVYWRSISEW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,448
Number of Sequences: 5004
Number of extensions: 54909
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)