Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_H02
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             247   6e-66
SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)                30   2.0  
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)                    29   4.5  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)                       28   7.9  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   7.9  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  247 bits (605), Expect = 6e-66
 Identities = 122/170 (71%), Positives = 132/170 (77%)
 Frame = +1

Query: 124  TTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAK 303
            TT +KA  HL GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLAPL K
Sbjct: 876  TTLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVK 935

Query: 304  VIHDNFEIIEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIP 483
            VI+DNF + EGLM             DGPS K WRDGRGA QN+IPASTGAAKAVGKVIP
Sbjct: 936  VINDNFGLEEGLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAKAVGKVIP 995

Query: 484  QLNGKLTGMAFRVPVAXVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKG 633
            ++NGKLTGMAFRVPVA VSVVDLT RL KPA YE IK  VK+A+E    G
Sbjct: 996  EVNGKLTGMAFRVPVADVSVVDLTCRLKKPAKYEEIKAVVKKASESKEMG 1045



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = +2

Query: 2   AVDGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVSQPLIK 139
           A DG LV+NGK ++VF+ +DP  IPWG+ GA+YVVESTGV   L K
Sbjct: 835 AKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFTTLEK 880



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 633  HLGYTEDQVVSSDF 674
            +LGYTEDQVVS+DF
Sbjct: 1047 YLGYTEDQVVSTDF 1060


>SB_502| Best HMM Match : DNA_pol3_alpha (HMM E-Value=0)
          Length = 428

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/69 (28%), Positives = 36/69 (52%)
 Frame = +1

Query: 412 GRGAQQNIIPASTGAAKAVGKVIPQLNGKLTGMAFRVPVAXVSVVDLTVRLGKPASYEAI 591
           GR A   II   T AAKAV + + ++ GK  G+A +  ++ +   ++ + L K    E  
Sbjct: 139 GRDAVSQIITFGTMAAKAVVRDVARVQGKAFGLADK--LSKLIPFEVGITLSKAMEQEPA 196

Query: 592 KQKVKEAAE 618
            ++  E++E
Sbjct: 197 LREFVESSE 205


>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
          Length = 1060

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 133 DKASAHLVGGAKKVIISAP--SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKV 306
           D+ S H V  A  V    P  +A+  +FV    +  YDP+  + ++ S   + LAP + V
Sbjct: 20  DRISKHGVQSAPAVFGQRPVSNANGTLFVRRFQMFRYDPNIAITTHGSSKKSGLAPASSV 79


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 636 NALQRTFSGFFNLLFNCFVASRFTETNSKVNN*YXCDRNTESHT 505
           N     ++  +N  +N    + +TE N++ N  Y  D NTE +T
Sbjct: 266 NDYNTEYNNEYNTEYNTEYNTEYTEYNTEYNTEYNTDYNTEYNT 309


>SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 652

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 575 AGLPRRTVRSTTDTXATGTRKAIPVSFPLSCGMTLP 468
           A LP+  +  T D     T  A P   PL+ G +LP
Sbjct: 164 AALPKMAIHCTLDGETASTAVATPSEPPLTAGPSLP 199


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 174 NHLRTKC*CSHVCSWCQPG 230
           +HLR+KC  + +CS CQ G
Sbjct: 683 DHLRSKCPSTRLCSKCQSG 701


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,056,824
Number of Sequences: 59808
Number of extensions: 445964
Number of successful extensions: 935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)