Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G24
         (111 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   0.79 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   5.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   7.4  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 0.79
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 81  AAVNSTVLQGGEASVTWISKVIFK 10
           A +N+ V+      V W+S  IF+
Sbjct: 105 AVINTNVIVSHTGEVVWLSHGIFR 128


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 28  IQSHLQTCE 2
           +Q+HL TC+
Sbjct: 183 VQAHLDTCD 191


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 29  IHVTEASPPCSTVLLTAAIL 88
           +H T   P  + +LLT  +L
Sbjct: 255 LHATYVIPAVTMMLLTLTVL 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,108
Number of Sequences: 438
Number of extensions: 279
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)