Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G24
         (111 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein, p...    27   1.8  

>At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein,
           putative (DRT100) similar to
           DNA-damage-repair/toleration protein DRT100 [Precursor]
           SWISS-PROT:Q00874, NCBI_gi:5701788; contains multiple
           LRR repeats Pfam profile: PF00560
          Length = 372

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 35  VTEASPPCSTVLLTAAILDLKINKI 109
           +T   PPC T L +  ILDL  NKI
Sbjct: 123 ITGEIPPCITSLASLRILDLAGNKI 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,131
Number of Sequences: 28952
Number of extensions: 21226
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 12,070,560
effective HSP length: 17
effective length of database: 11,578,376
effective search space used: 219989144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)