Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G23
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    29   0.66 
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    28   0.87 
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   2.7  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.7  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   6.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.1  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   8.1  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 80  KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 202
           K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = +2

Query: 65  VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 211
           VER+K++ +L Q  D + ++DE YY +  D Y+   EA    +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 233 DNRFCTISRILQQLSYWCSYRCW 165
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 98  QDVDQVNVDDEYYKIGKDYDVEANIDN 178
           Q+V Q+N +DEY +   + D EA IDN
Sbjct: 55  QNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 487 SRRIVDKLHKELVKRIHESIIALDNCNIICVHENC 383
           ++R  D  HK +VKRI   I   ++  ++ + + C
Sbjct: 137 NQRFNDNHHKSIVKRIRHEIKCYNSLQLVLLLDEC 171


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 65  VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 214
           + R+KK+L+L +  D + V+DE Y   +  D   +++    K     FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 496 SIYSRRIVDKLHKELVKRIHESIIALDNCNIICVHENC 383
           +I +R+I+ +L   ++ R ++   +  +  I+C  ENC
Sbjct: 438 AIGTRKILTQLSINMIPRYNQDNCSAGDIYILCFSENC 475


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 161 EANIDNYTNKKAVEEFLKLYRIGYLPK 241
           E  + N+T ++A+EE  KL     LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,693
Number of Sequences: 5004
Number of extensions: 47868
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)