Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G23
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0033 + 27820563-27823482,27823593-27823996                       30   1.6  
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985...    30   1.6  
01_07_0146 + 41464554-41464943,41465607-41465945,41467582-414676...    29   3.6  
01_07_0142 + 41433580-41433969,41434633-41434971,41436609-414366...    29   3.6  
10_06_0148 - 11263441-11263908                                         28   4.8  

>11_08_0033 + 27820563-27823482,27823593-27823996
          Length = 1107

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 13  GVTENVSLQDKRCRRSVCGAPEKGFIPFP 99
           GV  N++L+  R    +CG+P  G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737


>11_03_0093 -
           9852075-9852871,9852911-9853009,9853208-9853646,
           9853803-9854129
          Length = 553

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
 Frame = -1

Query: 502 KVSIYSRRIVDKLHKELVKRIHESIIALDNCNIICVHE--------NCPSFRCT-RAHTS 350
           +V  Y+R + D L+ + +    E +   + CN + +H+         CP+  C+ RAH  
Sbjct: 359 QVPTYARYLKDILNNKRLLPTTEVVKLTEQCNDVILHKLPEKKKDPRCPTITCSIRAHQF 418

Query: 349 ETALC 335
           + ALC
Sbjct: 419 DRALC 423


>01_07_0146 +
           41464554-41464943,41465607-41465945,41467582-41467662,
           41468487-41468578,41468667-41468710,41468788-41468843,
           41469656-41469814,41469922-41469957,41470130-41470231
          Length = 432

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 315 LKTLKLLQSAVSLVCARVHLNEGQFSCTHIILQ 413
           +K  KL++SAV L+ AR H+ EG+     II Q
Sbjct: 155 MKNDKLVESAVLLLAARKHIREGKPDGFDIIAQ 187


>01_07_0142 +
           41433580-41433969,41434633-41434971,41436609-41436689,
           41437514-41437605,41437694-41437737,41437815-41437870,
           41438683-41438841,41438949-41438984,41439157-41439258
          Length = 432

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 315 LKTLKLLQSAVSLVCARVHLNEGQFSCTHIILQ 413
           +K  KL++SAV L+ AR H+ EG+     II Q
Sbjct: 155 MKNDKLVESAVLLLAARKHIREGKPDGFDIIAQ 187


>10_06_0148 - 11263441-11263908
          Length = 155

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 500 FTSDLSH*NARRYSSRCKGYYYGIVKEEE 586
           F S L H N + Y S CK  +YG  +++E
Sbjct: 108 FNSGLLHPNTQDYISGCKDLWYGPYEDDE 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,667
Number of Sequences: 37544
Number of extensions: 288403
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)