Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_G23
(586 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 32 0.34
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 32 0.34
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 30 1.1
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 1.8
U23516-6|AAG38883.1| 132|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical pr... 29 3.2
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 27 7.4
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 27 7.4
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 31.9 bits (69), Expect = 0.34
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +2
Query: 35 FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 208
F+T++ +V+ + KKV S F + + D YY + + + V +TN V+E
Sbjct: 37 FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88
Query: 209 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 322
+K Y P + ++S EEAIA FH +Y K+
Sbjct: 89 IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 31.9 bits (69), Expect = 0.34
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +2
Query: 35 FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 208
F+T++ +V+ + KKV S F + + D YY + + + V +TN V+E
Sbjct: 37 FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88
Query: 209 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 322
+K Y P + ++S EEAIA FH +Y K+
Sbjct: 89 IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
C27F2.8 protein.
Length = 1715
Score = 30.3 bits (65), Expect = 1.1
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Frame = +2
Query: 8 SVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY-YKIGKD---YDVEANID 175
++VS T H + + +F R ++ +L D + + + Y + + Y+ E NI
Sbjct: 795 NLVSELTDHVEMNET-LMFSLRDTELFTLKSDSPVPKLREAFEYHLNHEMPRYNNEINIP 853
Query: 176 NYTNKKAVEEFLKL-YRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKDFETSTECRFA 352
+T ++ +K+ R+G+LP Y +R A+ + Y K + A
Sbjct: 854 RFTLSMILKPHMKIRLRLGFLPSDYTLRSSLLLIRNNLTAIEPVVMYGKGARIGVKVEGA 913
Query: 353 RVRSCAP 373
RS P
Sbjct: 914 EARSKKP 920
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +2
Query: 89 SLFQDVDQVNVDDEYYKIGKDYDVEANIDNY----TNKKAVEEFLKLYR--IGYLPKY 244
S+ DV ++++DD+Y+ +G +D + D + AV F L+R +LP Y
Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599
>U23516-6|AAG38883.1| 132|Caenorhabditis elegans Hypothetical
protein B0416.7a protein.
Length = 132
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 401 YYIAVIQRNDTLMDSFYQLLMKFIHNSSR 487
Y I +Q ND L+D ++L M HN SR
Sbjct: 67 YDIGGVQENDGLLDRNFELQMVVFHNCSR 95
>Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical
protein T04A8.9 protein.
Length = 249
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 80 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 208
KVL L Q Q ++ YYK+ K + + N N ++A ++F
Sbjct: 27 KVLGLAQSASQKDIKSAYYKLSKQHHPDTNPTN--KEEAAKKF 67
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 257 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 168
WRT + E + +F +SRIL+Q + W S C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 505 SKVSIYSRRIVDKLHKELVKRIHESIIALDNCNIICVHEN 386
S V+ +R V + H L+KRIHE L ++ + +N
Sbjct: 1757 SSVNTKARLFVQQFHVYLIKRIHEECAKLHEQSVNLLSDN 1796
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 505 SKVSIYSRRIVDKLHKELVKRIHESIIALDNCNIICVHEN 386
S V+ +R V + H L+KRIHE L ++ + +N
Sbjct: 1757 SSVNTKARLFVQQFHVYLIKRIHEECAKLHEQSVNLLSDN 1796
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,767
Number of Sequences: 27780
Number of extensions: 266924
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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