Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_G23
(586 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 29 2.3
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 29 3.0
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 29 3.0
At5g24250.1 68418.m02853 hypothetical protein 28 4.0
At4g22320.1 68417.m03227 expressed protein 28 5.3
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH... 27 7.0
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH... 27 7.0
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic... 27 7.0
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa... 27 7.0
At5g27230.1 68418.m03248 expressed protein ; expression support... 27 9.2
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa... 27 9.2
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -1
Query: 493 IYSRR----IVDKLHKELVKRIHESIIALDNCNIICVHENCPSFRCTRAHTSETALCRSF 326
IYS R I+D L K K + II + + C EN CT A+ + + CR
Sbjct: 1413 IYSNRDLSMILDALLKTKSKSVLVDIINKNGIRVSCHKEN----PCTGAYNQKASFCRDG 1468
Query: 325 KVFSI 311
KV +I
Sbjct: 1469 KVHNI 1473
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 116 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 226
N +DEY K DYD +D T K+A + L + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 68 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPK 241
E+ +K+L+ Q +DQ+ D+ K+G Y EA IDN ++ +
Sbjct: 82 EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141
Query: 242 YYEFSIFYQ 268
EF +F Q
Sbjct: 142 ALEFRLFRQ 150
>At5g24250.1 68418.m02853 hypothetical protein
Length = 226
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Frame = +2
Query: 230 YLPKYYEFSIFYQK-LREEAIALFHLFYYAKDFETSTECRFAR----------VRSCAPK 376
++P+YY F I + + + + + L + F+ DF S C F C
Sbjct: 136 FIPRYYHFLILFSRFVFDFSEELINFFFSIFDFRFSRRCLFRSWMMNCIGFDDREMCVEI 195
Query: 377 *GTVLVYAYYIAVIQRNDTLMDSFYQLLMK 466
VL+ Y+A++ R LM L++K
Sbjct: 196 RNRVLILEIYVAILWRYTRLMIRDLYLVIK 225
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 44 KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 205
K V +E QKK ++ ++ D++ DD KI +D VE D K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164
>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 742
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 250 LIVLGKITDSVQFQEFFNSFLIGVVI 173
++V G ITD++ F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229
>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 810
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 250 LIVLGKITDSVQFQEFFNSFLIGVVI 173
++V G ITD++ F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297
>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
similar to Deoxyribodipyrimidine photolyase (DNA
photolyase) (Photoreactivating
enzyme)(SP:Q55081){Synechocystis sp.}
Length = 526
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 469 YPQFFANIWTLYFRFIALKCKTVFF 543
Y F IW YFRF+++KC F
Sbjct: 321 YWVLFELIWRDYFRFLSIKCGNSLF 345
>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1240
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = -1
Query: 376 FRCTRAHTSETALCRSFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFN 197
F R +S + R +K+ ++++ K + + E+G++++L K DS+ F+
Sbjct: 598 FIAERFSSSGQPVDREYKILNLLDFTSKRKRMSAIVRDEEGQILLLCKGADSIIFERLSK 657
Query: 196 S 194
S
Sbjct: 658 S 658
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 50 VDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 214
V A+ +E+++K L L + + E+ K KD+D+E + K+ VE+ K
Sbjct: 69 VKALELEKKEKELCLIDESMKAK-QSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122
>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1218
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/51 (25%), Positives = 31/51 (60%)
Frame = -1
Query: 361 AHTSETALCRSFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 209
+H+ +T + R +KV ++++ K + + E+G++++L K DS+ F+
Sbjct: 584 SHSGQT-IEREYKVLNLLDFTSKRKRMSVVVRDEEGQILLLCKGADSIIFE 633
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,348,753
Number of Sequences: 28952
Number of extensions: 242013
Number of successful extensions: 614
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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