Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_G21
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 29 0.75
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 28 1.00
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.3
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 3.0
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 4.0
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 7.0
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 7.0
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 9.3
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 9.3
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 25 9.3
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.75
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 123 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 245
K L + + + YYK+ K Y +AN D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.00
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +3
Query: 108 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 254
VER+K++ +L Q D + ++DE YY + D Y+ EA +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 438 LYAVIQRNDTHGLLMDSFYQLLMKFIHKILPLIWTLYLRFYRT 566
L VI D H L + YQ KF +WTLYL F +T
Sbjct: 140 LNGVITLTDAHSLF-ERAYQTC-KFHFSKSQCVWTLYLEFLQT 180
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 276 DNRFCTISRILQQLSYWCSYRCW 208
D + T++++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 6 KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 173
K ++ A +I +++ + +H +D V + QK+ S D D+ V DE
Sbjct: 28 KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87
Query: 174 YYKIGKDYDVEA 209
+ +I +++ ++A
Sbjct: 88 FMQIKEEFPMKA 99
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 141 QDVDQVNVDDEYYKIGKDYDVEANIDN 221
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 492 YQLLMKFIHKILPLIWTLYLRFYRTKMQDGI 584
YQLL+ ++ P +W + +Y+++ Q G+
Sbjct: 1185 YQLLLNWLENSDPRVWQIKKDYYKSQNQYGL 1215
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 108 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 257
+ R+KK+L+L + D + V+DE Y + D +++ K FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 522 ILPLIWTLYLRFYRTKMQDGILHDAKAINYWNCKRGRA 635
IL LIWTL LRF + + L + + W C+R A
Sbjct: 102 ILGLIWTLILRFTIADINEEGLTAKEGLLLW-CQRKTA 138
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 354 YAKDFETFYKSAAFARVHLNEGQFLVRILYAVIQRNDTHGLLMDSFYQL 500
+ + E Y S VHLN+ ++L + +ND LL + YQL
Sbjct: 212 FLTETEPDYFSVGKCVVHLNDASVAAKLLMKLSSQNDDKSLL--TAYQL 258
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 204 EANIDNYTNKKAVEEFLKLYRIGYLPK 284
E + N+T ++A+EE KL LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 483 DSFYQLLMKFIHKILPLIWTLYLRF 557
D F + L+ +HK +P+IW LYL+F
Sbjct: 96 DCFERSLI-LLHK-MPVIWKLYLQF 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,563
Number of Sequences: 5004
Number of extensions: 52969
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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