Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G21
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0033 + 27820563-27823482,27823593-27823996                       30   1.8  
01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722     29   2.4  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   7.2  
01_07_0146 + 41464554-41464943,41465607-41465945,41467582-414676...    28   7.2  
01_07_0142 + 41433580-41433969,41434633-41434971,41436609-414366...    28   7.2  
07_01_0305 - 2181727-2184793,2185635-2185945                           27   9.6  
05_03_0416 + 13684604-13688050                                         27   9.6  

>11_08_0033 + 27820563-27823482,27823593-27823996
          Length = 1107

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 56  GVTENVSLQDKRCRRSVCGAPEKGFIPFP 142
           GV  N++L+  R    +CG+P  G +P P
Sbjct: 709 GVFSNITLKSLRGNAGLCGSPRLGLLPCP 737


>01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722
          Length = 460

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 501 LMKFIHKILPLIWTLYLRFYRTKMQDGILHDAKAINYWNCKRGRAVC 641
           L+ F+ KI P + TLY+  +       + HD + +++W    G  +C
Sbjct: 366 LLSFL-KIFPNVKTLYVMSHPPCTSSCVFHDERDVDFWMKNLGSILC 411


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 401 TSESGTLVEGFKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQF 255
           +S +G +   FK+ +++E   K   +   L  EDG++++  K  DS+ F
Sbjct: 599 SSSNGPVEREFKILNLLEFNSKRKRMSVILKDEDGQILLFCKGADSIIF 647


>01_07_0146 +
           41464554-41464943,41465607-41465945,41467582-41467662,
           41468487-41468578,41468667-41468710,41468788-41468843,
           41469656-41469814,41469922-41469957,41470130-41470231
          Length = 432

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 548 VKCPY*RKNFVDKLHKELVKRIHEQSMSIIALD 450
           + CPY + ++ D +HK++ K + + S S+ A +
Sbjct: 300 ILCPYNKISYSDIVHKDVTKAVAQMSTSLPAAE 332


>01_07_0142 +
           41433580-41433969,41434633-41434971,41436609-41436689,
           41437514-41437605,41437694-41437737,41437815-41437870,
           41438683-41438841,41438949-41438984,41439157-41439258
          Length = 432

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 548 VKCPY*RKNFVDKLHKELVKRIHEQSMSIIALD 450
           + CPY + ++ D +HK++ K + + S S+ A +
Sbjct: 300 ILCPYNKISYSDIVHKDVTKAVAQMSTSLPAAE 332


>07_01_0305 - 2181727-2184793,2185635-2185945
          Length = 1125

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 459 NDTHGLLMDSFYQLLMKFIHKILPLIWTLYLRFYRTKMQD 578
           +D+HGL++D   Q ++ F +  LP+ +   L +    +QD
Sbjct: 535 HDSHGLMLDENMQQILMFWYNDLPVHYKSCLTYLSLFIQD 574


>05_03_0416 + 13684604-13688050
          Length = 1148

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 470 WIAHGFVLPAPYEVYPQNSSVNMDTLLK 553
           WIAHGF+ P   E     +S   D+L+K
Sbjct: 332 WIAHGFITPMKEEQPKDIASEYFDSLVK 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,495,504
Number of Sequences: 37544
Number of extensions: 332210
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)