Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G21
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01240.1 68415.m00036 reticulon family protein (RTNLB15) cont...    30   1.1  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   2.6  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   3.5  
At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase...    28   4.6  
At4g22320.1 68417.m03227 expressed protein                             28   6.1  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   6.1  
At2g42370.1 68415.m05243 expressed protein                             28   6.1  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    28   6.1  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   8.0  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   8.0  

>At2g01240.1 68415.m00036 reticulon family protein (RTNLB15)
           contains PFam profile PF02453: Reticulon
          Length = 160

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 315 LREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQF--LVRILYAVIQRNDTHGLLMDS 488
           + E  + + +   Y KD +TF K+  +  +  N G +  L+ ILY  +  + T  ++   
Sbjct: 64  MMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQ 123

Query: 489 FYQLLMKFIHKI 524
           F +L+  F+ K+
Sbjct: 124 FQELIDSFMGKV 135


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = +3

Query: 111 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPK 284
           E+ +K+L+  Q   +DQ+   D+  K+G  Y  EA IDN       ++   +        
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 285 YYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFL 428
             EF +F Q     +  +F +F   ++   F +   +  + L E  +L
Sbjct: 142 ALEFRLFRQHGFNVSEDVFDVF--MENCGKFDRDDIYGLISLYEASYL 187


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 159 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 269
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 4 [Lycopersicon
           esculentum] GI:2459815; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 394

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 537 WTLYLRFYRTKMQDGILHDAKAINYWNCKRGRAVC 641
           W L+ +  R  +  G + DA+   YW+C++  + C
Sbjct: 111 WILFAKVNRISVYGGTI-DARGAGYWSCRKKGSHC 144


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 87  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 248
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 36  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 188
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At2g42370.1 68415.m05243 expressed protein
          Length = 715

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -3

Query: 530 RKNFVDKLHKELVKRIHEQSMSIIALDN 447
           R++ + +LHKE  + +H++++ I  L+N
Sbjct: 556 REDIIQQLHKESYEELHKKNVEIYKLEN 583


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 398 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 252
           S SG ++E  +KV +++E   K   +   +  E+G++++L K  DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 293 LIVLGKITDSVQFQEFFNSFLIGVVI 216
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 293 LIVLGKITDSVQFQEFFNSFLIGVVI 216
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,546,370
Number of Sequences: 28952
Number of extensions: 272125
Number of successful extensions: 680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)