Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G19
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    30   0.22 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   0.66 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   1.5  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    27   1.5  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   3.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   4.7  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   6.2  

>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +3

Query: 180 HSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFF--LASSVAEVTDYSD 353
           H +    EVIP+I++GIR+                 TL  PSD    L +S  + T  SD
Sbjct: 341 HRNHEGQEVIPIIIVGIRSLRNSGSDEDDQPSADSPTLMHPSDLISSLVNSQNQTTSVSD 400


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 312  FLASSVAEVTDYSDFLSRLRRYMCNLKPTTVIRHGKSNIFVHKDLQ 449
            F   S+   T  S+FLS+L  Y   +   TVI + K+  F  K LQ
Sbjct: 1130 FAGISLDLKTQISEFLSQLCSYFTKIVDGTVIENDKTLDFYEKPLQ 1175


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = +3

Query: 138 VERFHRQLKAAIMCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFL 317
           ++RF   LKA ++  +     +  P++ L  + A K +   SS+E+ +  TL+  +   +
Sbjct: 614 MKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQM 673

Query: 318 ASSVAE---VTDYSD---FLSRLRRYMCN 386
              + E    T Y      L RLR+  C+
Sbjct: 674 RKYLQEGTITTHYGSLLVLLLRLRQACCH 702


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 114 YHPAANGLVERFHRQ-LKAAIMCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGET 290
           + PA   L +   RQ L   ++C  +   Y++  ++LL +   WK    +S A ++   T
Sbjct: 110 FTPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSASGAVILSSST 169

Query: 291 LKLP 302
             LP
Sbjct: 170 RMLP 173


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 96  HISTTAYHPAANGLVERFHRQLKAAIMCHSDQNWYEVIPLILLGIRNAWKEDIG 257
           H ST  ++     L+E   R  K      S+ + YE+   ILL   N W++ +G
Sbjct: 15  HSSTLEFYDFVTTLLEPLSRIGKTRKSKTSNLDPYELKRKILLDYFNKWRQHVG 68


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = +3

Query: 162 KAAIMCHSDQNWYEVIPLILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVT 341
           +A ++   D+N    IPL  +     +  +    S      E L +P D  +  SVAEV 
Sbjct: 22  QAELLSSKDENLQPSIPLSPVAFELDFSGNFQFISDNS--SELLDIPKDKIIGHSVAEVL 79

Query: 342 DYSDFLSRLRRYMCNLK 392
               + + +R   C LK
Sbjct: 80  GTDGYNAFMRAVNCLLK 96


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 QQLTDLWNVSIGN*KQQLCVTPIKTGMKSF 210
           +QL +  N +IGN  +  C+   KTG+ +F
Sbjct: 169 KQLQEKRNRTIGNVYEMACLLVFKTGLMNF 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,504
Number of Sequences: 5004
Number of extensions: 40015
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)