Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_G19
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 51 5e-07
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 51 5e-07
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 51 5e-07
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 33 0.085
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 33 0.085
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 32 0.20
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 31 0.60
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 31 0.60
U58761-1|AAB00712.1| 333|Caenorhabditis elegans Hypothetical pr... 28 3.2
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 50.8 bits (116), Expect = 5e-07
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Frame = +3
Query: 15 PQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHS--D 188
P K+ TD+G++F + LF + + + HI+T Y+ ANG VERF++ + + +
Sbjct: 1681 PLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVP 1740
Query: 189 QNWYEVIPLILLGIRNAWKEDIGSSSAELVYGE----TLKLPSDFFLASSVAEVTDYSDF 356
W + + + N E+ G + L++G L++ + + + A++ +Y
Sbjct: 1741 MEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHL 1800
Query: 357 LSR 365
L++
Sbjct: 1801 LTQ 1803
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 50.8 bits (116), Expect = 5e-07
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Frame = +3
Query: 15 PQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHS--D 188
P K+ TD+G++F + LF + + + HI+T Y+ ANG VERF++ + + +
Sbjct: 1584 PLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVP 1643
Query: 189 QNWYEVIPLILLGIRNAWKEDIGSSSAELVYGE----TLKLPSDFFLASSVAEVTDYSDF 356
W + + + N E+ G + L++G L++ + + + A++ +Y
Sbjct: 1644 MEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHL 1703
Query: 357 LSR 365
L++
Sbjct: 1704 LTQ 1706
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 50.8 bits (116), Expect = 5e-07
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Frame = +3
Query: 15 PQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHS--D 188
P K+ TD+G++F + LF + + + HI+T Y+ ANG VERF++ + + +
Sbjct: 1595 PLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVP 1654
Query: 189 QNWYEVIPLILLGIRNAWKEDIGSSSAELVYGE----TLKLPSDFFLASSVAEVTDYSDF 356
W + + + N E+ G + L++G L++ + + + A++ +Y
Sbjct: 1655 MEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHL 1714
Query: 357 LSR 365
L++
Sbjct: 1715 LTQ 1717
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 33.5 bits (73), Expect = 0.085
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +3
Query: 195 WYEVIPL--ILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 368
WY IP+ IL + WK IG+ + G T F+ A + +S++
Sbjct: 972 WYHNIPISDILFTAEHHWK--IGAKNFTTSQGLTFGEQQQLFIKGQAAAAWQITLVMSQV 1029
Query: 369 -RRYMCNLKPTTVIRHGKSNI 428
Y C + +V RHG +NI
Sbjct: 1030 FHLYNCTTRRVSVFRHGLTNI 1050
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 33.5 bits (73), Expect = 0.085
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +3
Query: 195 WYEVIPL--ILLGIRNAWKEDIGSSSAELVYGETLKLPSDFFLASSVAEVTDYSDFLSRL 368
WY IP+ IL + WK IG+ + G T F+ A + +S++
Sbjct: 972 WYHNIPISDILFTAEHHWK--IGAKNFTTSQGLTFGEQQQLFIKGQAAAAWQITLVMSQV 1029
Query: 369 -RRYMCNLKPTTVIRHGKSNI 428
Y C + +V RHG +NI
Sbjct: 1030 FHLYNCTTRRVSVFRHGLTNI 1050
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 32.3 bits (70), Expect = 0.20
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +3
Query: 198 YEVIPLILLGIRNAWKEDIGSSSAELVYGETL--KLPSDFFLASSVAEVTDYSDFLSRLR 371
Y+ L++ G +++W+ + AE +Y E + +LPS+ V++ D + L+
Sbjct: 483 YKEDELLINGKQHSWRINTSVVPAEKIYSEDIDAQLPSELSRLGFKYLVSNCFDAPAPLK 542
Query: 372 RYMCNLKPTTVIRHGKSNIFVHKDLQKSSQ 461
+++CN+ I G S+ V K + + SQ
Sbjct: 543 QFLCNVSGLNRIPFGGSD--VEKKIAEVSQ 570
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 30.7 bits (66), Expect = 0.60
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +3
Query: 12 CPQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHSDQ 191
C + ITT+ F Y E+SK RH+S TA + G ++ F+R ++ +
Sbjct: 1612 CSKAITTEMNNVFAVYGI-EVSK----RHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 192 NWYEVIPLILL-GIRNAWKEDIGSSSAELVYG 284
+E L + + ++++ S SA LV G
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMG 1698
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 30.7 bits (66), Expect = 0.60
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +3
Query: 12 CPQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHSDQ 191
C + ITT+ F Y E+SK RH+S TA + G ++ F+R ++ +
Sbjct: 1612 CSKAITTEMNNVFAVYGI-EVSK----RHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 192 NWYEVIPLILL-GIRNAWKEDIGSSSAELVYG 284
+E L + + ++++ S SA LV G
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMG 1698
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 30.7 bits (66), Expect = 0.60
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +3
Query: 12 CPQKITTDRGRQFESYLFKELSKLTGSRHISTTAYHPAANGLVERFHRQLKAAIMCHSDQ 191
C + ITT+ F Y E+SK RH+S TA + G ++ F+R ++ +
Sbjct: 1612 CSKAITTEMNNVFAVYGI-EVSK----RHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 192 NWYEVIPLILL-GIRNAWKEDIGSSSAELVYG 284
+E L + + ++++ S SA LV G
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMG 1698
>U58761-1|AAB00712.1| 333|Caenorhabditis elegans Hypothetical
protein C01F1.4 protein.
Length = 333
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 212 WNDFIPVLIGVTHNC-CFQLPMETF 141
WN + PV++ + H+ CF L +E F
Sbjct: 68 WNSYKPVVLNIPHSSYCFPLTLEAF 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,808
Number of Sequences: 27780
Number of extensions: 216025
Number of successful extensions: 428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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