Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G19
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 91  PVIFLPRLTIQQLTDLWNVS 150
           P++ L +LT+Q    +W  S
Sbjct: 114 PLLELKKLTVQTFNSVWGAS 133


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 212 WNDFIPVLIGV 180
           WN+F+P L G+
Sbjct: 577 WNEFLPKLKGI 587


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 248 RYRKFLSRACIWRNFKAP 301
           RYR+ L + C W     P
Sbjct: 342 RYRQELQKRCKWMGIHEP 359


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 248 RYRKFLSRACIWRNFKAP 301
           RYR+ L + C W     P
Sbjct: 342 RYRQELQKRCKWMGIHEP 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,660
Number of Sequences: 438
Number of extensions: 2634
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)