Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G18
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    30   0.14 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    29   0.44 
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    28   0.58 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    28   0.77 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   1.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    22   6.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    24   9.5  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 237 CPGYTVINYNPFTCDPVCDP--PCVNGVCKQ 323
           C   + +N  PF C+ VCD   PC    CK+
Sbjct: 325 CSNISKVNTEPFRCENVCDELLPCGEHTCKK 355


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 376 TVVCPFVHSV----LNGSCVAPNTCECNNG 453
           TV+CP V+ V     NG+C  P+   C+NG
Sbjct: 807 TVLCPIVNGVSYQNCNGACYNPSQYGCDNG 836


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 318 KQP-NVCQCNANYTDNPLNPHSCLPICTQCTKWKLR--SAEYL*M**W 452
           K P NV + N N +D+     SCL  C + T  +LR  ++ YL M  W
Sbjct: 199 KSPANVVELNVNLSDSQKTIQSCLLTCIESTMRELRRLNSAYLDMEDW 246


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 39  SDVESQVCPTQSVEYRNVPELVQVPYQQSYWRPFCFLGPICIYQQTEYRNEWVNK 203
           S VES VCP + VE RN+ E+      +  ++ +C        ++T  RN W+NK
Sbjct: 688 SRVES-VCPVEDVEERNIFEITMTNGMKLVFQSYC--------ERT--RNLWINK 731


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 433  YSALRNFHLVHC----VQMGKQLCGFNGLSV*LALH*QTLGCLHTPLTHGGSQ 287
            YS L    L  C    +Q  K+LC +N L+  L+LH Q  G LHT +     Q
Sbjct: 938  YSGLAQESLEACKACLLQGNKELC-YNLLNESLSLHEQIYGVLHTEVARAYCQ 989


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 131 PI*LLIRNLYKFGDVPIFNTLRGANLTF 48
           P+ +LI N     D P +NT+RG+ L +
Sbjct: 837 PVIVLIANYLGLMDGPFWNTIRGSGLAY 864


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 21.8 bits (44), Expect(2) = 6.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 105 QVPYQQSYWRP 137
           Q PY Q+Y+RP
Sbjct: 526 QSPYMQNYYRP 536



 Score = 21.0 bits (42), Expect(2) = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 36  SSDVESQVCPTQSVEYRNVP 95
           S+D  S+  PT+SVE   +P
Sbjct: 481 SADDHSRATPTRSVEAPTLP 500


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 442 IHKYSALRNFHLVHCVQMGKQLCGFNG 362
           +   S++  F+L+    +G  +CG+NG
Sbjct: 681 VSSISSILTFNLLGIPMVGADVCGYNG 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,183
Number of Sequences: 5004
Number of extensions: 42704
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)