Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_G18
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0982 + 9945920-9946066,9946185-9946254,9946481-9946526,994... 31 0.33
10_02_0068 + 4888273-4889266,4889375-4889397 30 1.0
11_08_0019 + 27697918-27698609,27701107-27701372,27701778-277019... 29 1.3
06_03_1317 - 29275262-29276424,29278476-29279352 29 1.3
12_02_0146 + 14400772-14401086 29 2.3
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 29 2.3
08_02_1156 - 24760332-24761530,24762757-24763648 28 3.1
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 28 4.0
10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340 28 4.0
08_01_1079 - 11049443-11049550,11049629-11049841,11051840-11051923 28 4.0
10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247 27 7.1
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 27 7.1
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 27 7.1
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 27 7.1
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364... 27 9.3
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767... 27 9.3
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 27 9.3
01_06_1475 + 37634831-37636297 27 9.3
>12_01_0982 +
9945920-9946066,9946185-9946254,9946481-9946526,
9947009-9947068,9947484-9947775
Length = 204
Score = 31.5 bits (68), Expect = 0.33
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +3
Query: 261 YNPFTCDPVCDPPCVNGVCKQPN-------VCQCNANYTDNPLNPHSCLPICTQCTK-WK 416
+NP P+C PPC + + PN C+ NA + L+ + + C K K
Sbjct: 26 HNPRHARPLCVPPCPHSAVQTPNQILLASPKCRSNAGCSTPQLSAGTVKRLLIYCKKLGK 85
Query: 417 LRSAEY 434
L+S EY
Sbjct: 86 LKSLEY 91
>10_02_0068 + 4888273-4889266,4889375-4889397
Length = 338
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 300 CVNGVCKQPNVCQCNANYTDNPLNPHSC 383
CVN Q VC+C Y NP P C
Sbjct: 303 CVNTTNGQGYVCKCQEGYEGNPYLPDGC 330
>11_08_0019 +
27697918-27698609,27701107-27701372,27701778-27701948,
27702187-27703166,27703723-27703804,27704148-27704170
Length = 737
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Frame = +3
Query: 234 CCPGYTVINYNPFTCDPV--CDP------PCVNGVCKQPN---VCQCNANYTDNPLNPHS 380
C GY Y P C + CDP PC G C C+CN + N +S
Sbjct: 304 CSDGYHGNPYLPEGCIDINECDPSTYKENPCPGGTCHNLEGGYKCKCNFGRRKDRKNNNS 363
Query: 381 CLPICTQ 401
C P+ ++
Sbjct: 364 CQPVLSK 370
>06_03_1317 - 29275262-29276424,29278476-29279352
Length = 679
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 300 CVNGVCKQPNVCQCNANYTDNPLNPHSCLPI 392
CV+G VC C+ YT NP P+ C+ +
Sbjct: 266 CVDGA--PGYVCNCSQGYTGNPYLPNGCVGV 294
>12_02_0146 + 14400772-14401086
Length = 104
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 347 GVTLTDVRLFTYSIDAWRIANRIASKWVIID 255
G+T+ D+ Y D+W +ANR+A + + D
Sbjct: 23 GLTVVDLASVGYKDDSWVLANRVAQVFYVKD 53
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 300 CVNGVCKQPNVCQCNANYTDNPLNPHSCLPI 392
CVN + +C C+A Y+ NP C+ I
Sbjct: 261 CVNATNGKGYLCNCSAGYSGNPYVTGGCINI 291
>08_02_1156 - 24760332-24761530,24762757-24763648
Length = 696
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 333 CQCNANYTDNPLNPHSC 383
C+CNA Y NP P+ C
Sbjct: 280 CRCNAGYQGNPYIPNGC 296
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 300 CVNGVCKQPNVCQCNANYTDNPLNPHSCLPI 392
CV Q +C+C+ Y NP P C I
Sbjct: 303 CVQASNSQGYLCKCSEGYEGNPYLPKGCQDI 333
>10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340
Length = 644
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 300 CVNGVCKQPNVCQCNANYTDNPLNPHSC 383
CVN +C C+ Y NP P+ C
Sbjct: 282 CVNVTNGDGYICNCSKGYDGNPYIPNGC 309
>08_01_1079 - 11049443-11049550,11049629-11049841,11051840-11051923
Length = 134
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 452 PLLHSQVFGATQLPFSTLCTN-GQTTVWIQRIIRIIGVTLTDVRLFTYS 309
PL+HSQ AT +P +TL + W QR+ G+ D FTY+
Sbjct: 65 PLIHSQNVPATGVPVATLEQRASRNDAWSQRMREKYGL---DTSQFTYN 110
>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
Length = 722
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +3
Query: 300 CVNGVCKQPNVCQCNANYTDNPLNPHSCLPI 392
CVN +C+C+ +Y NP C I
Sbjct: 299 CVNATSSPGYICKCSDHYDGNPYIADGCQDI 329
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3
Query: 300 CVNGVCKQPNVCQCNANYTDNPLNPHSCLPI 392
CVN +C C Y NP H C I
Sbjct: 168 CVNSSSGPGYICNCTHGYQGNPYLLHGCQDI 198
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 288 CDPPCV-NGVCKQPNVCQCNANYTDNPLNPHSCLPICT 398
C C +G+CK +C+C + +T + C C+
Sbjct: 568 CPAKCTGHGICKANGICECESGWTGIDCSTAVCDEQCS 605
>03_05_0466 -
24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 300 CVNGVCKQPNVCQCNANYTDNPLNPHSCLPICTQCT 407
CVN C CN Y NP + C I +CT
Sbjct: 591 CVNSSNGMGYSCSCNQGYEGNPYLDNGCQDI-DECT 625
>11_08_0022 +
27733247-27733935,27735722-27735981,27736213-27736404,
27737695-27738686
Length = 710
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 282 PVCDPP---CVNGVCKQPNVCQCNANYTDNPLNPHSCLPICTQCTKWKLR 422
P C P CVN Q +C+C+ Y NP CT + KLR
Sbjct: 277 PACVSPNSYCVNTTNGQGYLCKCSPGYDGNPYVTGD--SGCTNINECKLR 324
>05_03_0362 -
12973488-12974251,12975346-12975580,12976410-12976738,
12977277-12977404,12977695-12977879,12977972-12978165,
12978239-12978368,12978507-12978566,12979037-12979059,
12979158-12979218,12979677-12979748,12979804-12979924,
12980351-12980415,12980973-12981089,12981970-12982239
Length = 917
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 160 QIGPKKQNGLQYDC*YGTCTSSGTFR 83
+IG QN L Y C GTC TF+
Sbjct: 81 RIGELMQNNLPYSCWLGTCFLGLTFQ 106
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +3
Query: 267 PFTCDPVCDPPCVNGVCKQPNVCQCNANYTDNPLNPHSCLPICTQCTKW 413
PF V PP G C P+ C C+ P P P C C W
Sbjct: 106 PFPYPYVYPPPPPCGGCATPHCCDCHPK--PPPPAPAPAKPAC-GCPAW 151
>01_06_1475 + 37634831-37636297
Length = 488
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +3
Query: 261 YNPFTCDPVCDPPCVNGVCKQ--PNVCQCNAN 350
+NP V D PC + C+Q P C A+
Sbjct: 134 FNPVRSTTVADVPCTDDACQQFAPQTCGAGAS 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,558,743
Number of Sequences: 37544
Number of extensions: 259515
Number of successful extensions: 688
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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