Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G15
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    29   0.66 
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   1.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.0  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    27   2.7  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   3.5  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    26   4.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   4.7  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    26   4.7  

>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 10  LYNVHHIWCYKNLQARRE-TRESTWRNPGWDECVAYTVP--LIREMHCRILEPTEFSP 174
           ++N+H I+  K L  +RE  ++ T  N  WD  +       + R    +I E  E++P
Sbjct: 204 MHNIHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRKPAKIRETKEYTP 261


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 475 EVSLQKYIIYIEFWHSIKRINDENNFKYRKRHLYSIKYNPIN 350
           E++ Q  ++Y E    +KR+  +N    ++   Y I Y P++
Sbjct: 21  ELTCQNCMVYGEECRYVKRVKHDNRAAVQENERYPILYTPLS 62


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 433  HSIKRINDENNFKYRKRHLYSI 368
            H I R N ++ FK +K HL SI
Sbjct: 1594 HEISRFNSQSVFKSKKHHLKSI 1615


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 442 EFWHSIKRINDENNFKYRKRHLYS 371
           E  HS++ +++ENN+K   R+ +S
Sbjct: 88  ELEHSLEELDEENNYKLHLRYSFS 111


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
            Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 472  VSLQKYIIYIEFWHSIKR--INDENNFKYRK 386
            V++  Y  Y+E W SI+R   N +   K+R+
Sbjct: 979  VAVMFYFFYVEIWKSIRRSLTNPQKKGKFRR 1009


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 31  WCYKNLQARRETRESTWRNPGWDECVAYTVPLIREMHCRILEPTEFSP 174
           WC   +QA      + +R+   + CV   VP        I +PTEF P
Sbjct: 64  WCEGYIQANLLVLPAKYRDDFVNLCVRNPVPCPLLGETEIGKPTEFKP 111


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 543  VNYGIXIRYTFSFHKI*FTLSHKKFHFKNISST 445
            V Y + +RYT+S  +I    S  +FHF + S +
Sbjct: 939  VFYELLLRYTYSDERIESYPSDSRFHFNSSSKS 971


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 442 EFWHSIKRINDENNFKYRKRHLYSIKYNPIN 350
           +FWH   +  +E+N+   K+  + ++YN  N
Sbjct: 353 DFWHQNAKRLNEDNYALLKKLFHIVQYNEDN 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,808
Number of Sequences: 5004
Number of extensions: 44749
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)