Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G15
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    31   0.89 
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    29   2.1  
01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242...    29   2.7  
02_02_0457 + 10503801-10507358                                         29   3.6  
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322...    27   8.3  

>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 448 YIEFWHS---IKRINDENNFKYRKRHLYSIKYNPIN 350
           YI+FW     +K++  ++  KYR   LY I ++P+N
Sbjct: 844 YIQFWDGKVFVKKVCPKDGTKYRAEVLYYILFHPLN 879


>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
            14050145-14050272,14050409-14050502,14050749-14051237,
            14052622-14052915,14053602-14053732,14053829-14055440,
            14055539-14055651,14055902-14056933,14057023-14057145,
            14057250-14057688
          Length = 1656

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -1

Query: 466  LQKYIIYIEFWHSIKRINDENNFKYRKRHLYSIKYNPINPYTI*VK*ICPFL 311
            + ++ +  + +HS   ++D+ +  Y   +L SI  N + P+ + VK  CP +
Sbjct: 1179 IDRFPVQAKVYHSFDSVDDDPHNSYPLDYLNSITPNGLPPHELIVKINCPVI 1230


>01_06_0614 +
           30621495-30621670,30621817-30622036,30623848-30624270,
           30624523-30624906,30624991-30625086,30625161-30625276,
           30625431-30625598,30625685-30625844,30625999-30626196,
           30626304-30626432,30626595-30626673,30627010-30627119
          Length = 752

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 137 ISLISGTV*ATHSSQPGLRQVLSRVSRR 54
           + ++SGT   TH ++P  R+VLS++S +
Sbjct: 683 VDIVSGTKVRTHFARPNWRKVLSKISSK 710


>02_02_0457 + 10503801-10507358
          Length = 1185

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 515 HFRFIKYNSHCPIRSFTSKIYHLH*VLAFNKT 420
           H R++K +  CP +S   +  HL+ +  F+ T
Sbjct: 646 HLRYLKISGDCPFKSLPQEFCHLYNLQIFSAT 677


>05_06_0156 -
           26031463-26031572,26031961-26032039,26032133-26032261,
           26032362-26032559,26032741-26032900,26032980-26033147,
           26033290-26033405,26033491-26033586,26033675-26034058,
           26035150-26035572,26037202-26037315,26037969-26038017,
           26038103-26038262,26038345-26039014
          Length = 951

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -3

Query: 137 ISLISGTV*ATHSSQPGLRQVLSRVSRR 54
           + ++SGT   TH ++P  ++VLS+++ +
Sbjct: 882 VDIVSGTKVRTHFARPNFKKVLSKIASK 909


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,620,511
Number of Sequences: 37544
Number of extensions: 242466
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)