Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G15
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo...    30   1.3  
At3g09930.1 68416.m01188 GDSL-motif lipase/hydrolase family prot...    28   4.0  
At5g60740.1 68418.m07621 ABC transporter family protein similar ...    28   5.3  
At2g39080.1 68415.m04802 expressed protein                             27   7.0  

>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
           CAN [Xenopus laevis] gi|5764080|emb|CAB53357
          Length = 824

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 144 AMHFSDQWYCVSDAFVPAGVAPGTLTCFTSSLEVLVAPN 28
           A+ FSD + C  D  VP GV P  L  +    ++ V  N
Sbjct: 291 ALSFSDLFPCSMDDLVPVGVGPHLLFSYIDQCKLAVTAN 329


>At3g09930.1 68416.m01188 GDSL-motif lipase/hydrolase family protein
           similar to SP|P40602 Anther-specific proline-rich
           protein APG precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00657 lipase acylhydrolase with
           GDSL-like motif
          Length = 354

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 23  IIFGATRTSRLDVKHVRVPGATPAGTNASLTQYH*SEKCIAAF*NLQSSHLHN 181
           I   A R  +L V  + +P   P G   S+T ++  ++C A   +  S++LHN
Sbjct: 194 IAVNAMRIHKLGVNKIVIPSMQPLGCLPSITVFNSFQRCNAT--DNASTNLHN 244


>At5g60740.1 68418.m07621 ABC transporter family protein similar to
           ATP-binding cassette, sub-family G, member 2
           (Placenta-specific ATP- binding cassette transporter)
           (Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
           sapiens]
          Length = 1061

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 103 IRPSRGCARYSHVFHVEPGGSCSTKYDVR--CKDDR 2
           ++P++ C   S +   EPG +C T  DV+   KDD+
Sbjct: 132 LKPNKNCNLSSWMSGCEPGWACRTAKDVKVDLKDDK 167


>At2g39080.1 68415.m04802 expressed protein 
          Length = 351

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 451 IYIEFWHSIKRINDENNFKYRKRHLYSI 368
           +YI FW SI ++N++     R  H+ ++
Sbjct: 234 LYISFWISILKLNEQETIDARPDHILNL 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,492,659
Number of Sequences: 28952
Number of extensions: 211458
Number of successful extensions: 447
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)