Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G13
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.9  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   2.5  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   7.5  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.9  

>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 84  LAHLALHQAVPLEVRAAALDLVVRNRMEWPETLVSVAWELHERGPH-ELRRIFW 242
           LA+  + QA  L+  + ++DL  R R+EW  T+ + + + +E  P  + RR+++
Sbjct: 141 LAYPEIQQA--LQSISHSIDLQERERIEWENTIQTSSQQKYEEIPDIQARRLYF 192


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 254 VQPLPEYPPELVGSALVQLPRDRDQCLRPLHAVPHHQVERRRPH 123
           VQ + +  PELVGS+L QL          + AVP   ++  RPH
Sbjct: 61  VQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVP-KPLKFLRPH 103


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 361 SSTVEEPACACASHPRSSGPSAASRLRT*WLCGARE 254
           ++ VEE     +  P SSG S+ + L    +CG++E
Sbjct: 12  TTPVEEKIPVASYSPSSSGSSSGASLLVDIMCGSKE 47


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 180 LVSVAWELHERGPHELRRIFWQRLNSLAPQSHQVRSLLAALG 305
           L+++ W+L +    E+   F   +  LAP S  V    A+ G
Sbjct: 329 LLAILWKLGQTSSEEVSNAFTNYIIGLAPLSQSVFDSQASTG 370


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 243 QRLNSLAPQSHQVRSLLAALGPELRGWDAQAHAGSS 350
           +RL    P + Q+R L   LGP   G+  Q++A  S
Sbjct: 74  RRLRVDFPTADQIRRLDKLLGPSRYGYYPQSYANQS 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,073
Number of Sequences: 5004
Number of extensions: 19130
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)