Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G13
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899...    35   0.050
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930...    29   2.5  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    27   7.6  

>07_03_1568 -
           27788314-27788619,27789125-27789294,27789868-27789979,
           27790063-27790117,27790201-27790316,27790731-27790812,
           27790974-27791228,27791326-27791454,27791539-27791747
          Length = 477

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 16/74 (21%), Positives = 39/74 (52%)
 Frame = +3

Query: 138 LDLVVRNRMEWPETLVSVAWELHERGPHELRRIFWQRLNSLAPQSHQVRSLLAALGPELR 317
           ++++   ++ WP +L+    ++   G  +    +  ++N L  ++HQ+R+ LAA+G  + 
Sbjct: 330 MEILDCKKVPWPSSLIRKVHKVDNCGWPQQEAAYECKINLLTGKTHQIRAQLAAIGTPIV 389

Query: 318 GWDAQAHAGSSTVL 359
           G  A   A  + ++
Sbjct: 390 GDSAYMTAAMAAIV 403


>05_05_0310 -
           23991461-23991652,23991780-23991965,23992813-23993094,
           23993220-23993382,23993477-23993661,23994154-23994205,
           23994292-23994392,23995244-23995417
          Length = 444

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 242 PEYPPELVGSALVQLPRDRDQCLRPLHAVPHH 147
           P  PP+LV S L       +Q L+P H V +H
Sbjct: 263 PILPPQLVMSVLGDTDNSEEQTLKPKHVVLNH 294


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 85  WRTWRCTRPFHWRCGR 132
           WR  + TRP+ WRC R
Sbjct: 69  WRWRQITRPYSWRCRR 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,463,429
Number of Sequences: 37544
Number of extensions: 191528
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)