Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G13
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    30   1.2  
At1g79820.2 68414.m09323 hexose transporter, putative similar to...    28   4.8  
At1g79820.1 68414.m09322 hexose transporter, putative similar to...    28   4.8  

>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 138 LDLVVRNRMEWPETLVSVAWELHERGPHELRRIFWQRLNSLAPQSHQVRSLLAALGPELR 317
           L+++   ++ WP+       ++ + G       +   +N L  ++HQ+R+ LAA G  L 
Sbjct: 333 LEVLECKKIPWPDAATEKKHDIEDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLV 392

Query: 318 G 320
           G
Sbjct: 393 G 393


>At1g79820.2 68414.m09323 hexose transporter, putative similar to
           hexose transporter GI:8347246 from (Solanum tuberosum);
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 495

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 481 RLPTYSGSKCGPAAWRRS 534
           RLPT +G  CG  +W+RS
Sbjct: 37  RLPTGTGKDCGNPSWKRS 54


>At1g79820.1 68414.m09322 hexose transporter, putative similar to
           hexose transporter GI:8347246 from (Solanum tuberosum);
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 495

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 481 RLPTYSGSKCGPAAWRRS 534
           RLPT +G  CG  +W+RS
Sbjct: 37  RLPTGTGKDCGNPSWKRS 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,287
Number of Sequences: 28952
Number of extensions: 122601
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)