Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_G12
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.53
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 1.2
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 3.7
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 3.7
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 4.9
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 6.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 6.5
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 25 8.6
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 25 8.6
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 8.6
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 8.6
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 8.6
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.53
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 177 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 284
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 242 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 391
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 254 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYHNEEQRLTY 424
+NMD LL Y TK D + +NY ++ Y + N ++F+ +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 263 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 382
D + I R K G + HD +NY ++ E++ + N S
Sbjct: 83 DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 352 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 248
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 358 LLFLFYNSIINSLCIVKN 305
++FLF N +++ +C VKN
Sbjct: 38 IIFLFLNYVVDIVCYVKN 55
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 149 NEGQFL-YAYYIAVIQRNDTHG 211
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 8.6
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Frame = +2
Query: 11 YLPKYYEFSIFYQKLREEAIALF----HLFYYAKDFETFYKSA------AFARVHLNEGQ 160
+L + + +S Y + + + F LF DF ++ + R+H +
Sbjct: 96 FLAELHGYSYLYDNISDYGLKYFLCSLPLFVMFSDFGIYWAHRFLHHRYVYPRLHKLHHK 155
Query: 161 FLYAYYIAVIQRNDTHGFVLPAPYEVYPQFF-VNMDTLLKIYR-TKMQDGILHDAKAIN 331
++ A GF+ PY ++P FF ++ T L ++ ++HD K I+
Sbjct: 156 WIICTPYASHAFKSADGFLQSLPYHLFPFFFPLHKLTYLALFTFVNFWSIMIHDGKYIS 214
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 24.6 bits (51), Expect = 8.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 331 LWNCKRGRAVCVLRQLFQH 387
+WN + G +C R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 356 QYVYYANYSNTFLYHNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 505
Q ++ SN + N L+ Y+T D GF S Y Y S + S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 344 KEEEQYVYYANYSNTFLYHNEEQRL 418
KE E+YV AN +FLY +E+ L
Sbjct: 52 KEPEKYVSDANAIVSFLYWKQEEDL 76
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 8.6
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 212 FVLPAPYEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 391
FV+ + +P F NMD L K+ + GI DAK I +++ +Y+++A F
Sbjct: 689 FVVSSHIRSHPAFDPNMDVLKKV---PTETGI--DAKPIPQDLLR---KYIHFAR-EKVF 739
Query: 392 --LYHNEEQRLTYLTEDI 439
L +E++++ L D+
Sbjct: 740 PRLQQMDEEKISRLYSDM 757
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,584
Number of Sequences: 5004
Number of extensions: 42249
Number of successful extensions: 119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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