Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G11
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    59   5e-10
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   1.5  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    27   1.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   8.0  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 58.8 bits (136), Expect = 5e-10
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
 Frame = +1

Query: 193 PFEFTAP-NQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPTSAMHKVAEILNLPR 369
           P  F  P N +  +A+LA YP   +  A++PLLDLAQR +G W+P +AM+++A +  +  
Sbjct: 3   PIRFFKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSI 62

Query: 370 MRVYEVATFY-TMFIRRPIGKYHVQVCTTTPC 462
             V+ +   Y   F  RP  K  V++C +  C
Sbjct: 63  DYVHSLILAYPNDFFWRP-KKPRVRICNSWMC 93


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 457 PCWLRGSDAVLKAIKEATGC--EVGGNSP 537
           PCWL+       A+K A+ C  E+G +SP
Sbjct: 477 PCWLKIQQPNFDAVKNASWCRVEIGCSSP 505


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 486 NSIRSTKPAWSRCTHLYMILSYWSPNKHSIECCNFIHSH 370
           N +   KP WS    LY I +Y  P +HS+      H H
Sbjct: 147 NYLLLNKPPWSDACKLYDIKAY-LPVEHSVARARVAHRH 184


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/84 (21%), Positives = 33/84 (39%)
 Frame = +1

Query: 13  VFSQYSFIKIKSNIKIMLSSLKTGVQTLWRMXXXXXXXXXXXXHDSLFVHRDTPEDNPSI 192
           ++S  S I++  NI+  +S+          +            H S+       +     
Sbjct: 48  IYSSTSIIQVWQNIQDFISTKNDNAAFRELVYNLMMRYVSTQKHLSIIERHTFFQTIEKD 107

Query: 193 PFEFTAPNQKRVEALLAIYPEGHK 264
           PF+  A  Q R+++L  +  EGHK
Sbjct: 108 PFQDIAELQLRLKSLSVLTDEGHK 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,737
Number of Sequences: 5004
Number of extensions: 48526
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)