Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G11
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152...   158   3e-39
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418...    31   0.50 
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979...    31   0.50 
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713...    30   1.5  
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558...    29   3.5  
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489...    28   4.7  

>05_06_0024 +
           25014274-25014375,25014655-25014720,25015117-25015233,
           25015757-25015834,25015911-25016016,25016150-25016196,
           25016386-25016463,25016898-25016963,25017102-25017165,
           25017406-25017428
          Length = 248

 Score =  158 bits (384), Expect = 3e-39
 Identities = 69/139 (49%), Positives = 100/139 (71%)
 Frame = +1

Query: 160 HRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPTSAMH 339
           H D+PE+NP +P+EFT  N K+V  +L+ YP  +K+  +IP+LDLAQ+ +GGW+P +AM+
Sbjct: 35  HLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMN 94

Query: 340 KVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKAIKEATGCE 519
            +A+I+ +  +RVYEVATFYTMF R  +GKYH+ VC TTPC +RGS  + +A+ E  G +
Sbjct: 95  AIAKIVEVAPIRVYEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSREIEEALLEHLGVK 154

Query: 520 VGGNSPCGKFSVSEVECLG 576
               +  G FSV E+EC+G
Sbjct: 155 RNEVTSDGLFSVGEMECMG 173


>07_01_0564 -
           4183441-4183530,4183683-4183752,4183972-4184063,
           4184141-4184240,4184372-4184478,4184703-4184768,
           4184879-4185013,4185653-4185808,4186113-4186262,
           4186426-4186557,4187604-4187693
          Length = 395

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 168 VSVDEETVMLEGRSGLQTSRRHAPQGLNPS 79
           + +DEE++   G  G QTS RHA Q L+P+
Sbjct: 323 IDIDEESLAFLGEIGQQTSLRHAIQLLSPA 352


>01_06_1273 +
           35896320-35896400,35896548-35896736,35897817-35897948,
           35898093-35898242,35898564-35898719,35899462-35899596,
           35899706-35899771,35900016-35900122,35900258-35900357,
           35900436-35900527,35901026-35901095,35901229-35901318
          Length = 455

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 168 VSVDEETVMLEGRSGLQTSRRHAPQGLNPS 79
           + +DEE++   G  G QTS RHA Q L+P+
Sbjct: 383 IEIDEESLAFLGEIGQQTSLRHAIQLLSPA 412


>09_02_0308 +
           7137099-7137132,7137495-7137611,7138252-7138319,
           7138413-7138538,7138650-7139619,7139641-7139737,
           7140026-7140113,7140336-7140396,7140425-7140447,
           7140663-7140776,7141193-7141306,7144731-7144825,
           7146506-7146824,7147166-7147309,7147463-7147564,
           7147868-7147971,7148121-7148247,7148804-7148845,
           7148939-7149091,7149326-7149426,7149807-7150227
          Length = 1139

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 457 PCWLRGSDAVLKAIKEATGC-EVGGN-SPCGKFSVSEVECL 573
           PC +   +A    I  A  C E+G + SPCG+F V+ V CL
Sbjct: 451 PCAVLAPEACCLTISHAVLCSEMGTHFSPCGRFLVACVACL 491


>01_05_0758 +
           24954701-24954793,24954907-24955086,24955676-24955870,
           24955982-24956089,24956211-24956288,24956383-24956464,
           24956624-24956783,24956877-24957179,24957295-24957513,
           24957598-24958057,24958175-24958240,24958332-24958511
          Length = 707

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 409 IRRPIGKYHVQVCTTTPCWLRGSDAVLKAIKEATG 513
           +RR  G+  V V  TTP  LRG +A   A  E+ G
Sbjct: 35  VRRGDGEIFVSVEPTTPARLRGGEAAAAAAGESPG 69


>03_05_1094 - 30348366-30348467,30348571-30348753,30348833-30348934,
            30349617-30349967,30350049-30350276,30350353-30350509,
            30351189-30351370,30351443-30351866,30351949-30352892,
            30353509-30353773,30354558-30355120
          Length = 1166

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 421  IGKYHVQVCTTTPCWLRGSDAVLKAIKE 504
            +G Y   VC  TPCW+  +  VL+A+++
Sbjct: 1007 LGTYPPNVCVGTPCWM--APEVLRAMRD 1032


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,634
Number of Sequences: 37544
Number of extensions: 308658
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)