Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G11
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   6.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 165 SVDEETVMLEGRSGLQTSRRHAPQGLNPSF 76
           S+   + ++ G S   T R H P    PSF
Sbjct: 382 SIRNRSGLVSGSSTPGTGREHDPAKFPPSF 411


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 98  GACLLEVCRPLLPSSMTVSSSTETPLK 178
           G CL+E    +LP +     +   PL+
Sbjct: 168 GKCLIEALDAILPPTRPTDKALRLPLQ 194


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 98  GACLLEVCRPLLPSSMTVSSSTETPLK 178
           G CL+E    +LP +     +   PL+
Sbjct: 225 GKCLIEALDAILPPTRPTDKALRLPLQ 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,413
Number of Sequences: 438
Number of extensions: 3324
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)