Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G10
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    27   2.2  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   3.0  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   6.8  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   6.8  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   9.0  

>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 270 ISFF--IRVTAVCDVFSLLQYIDRWTSANYRIS 178
           ISFF  + +T+  D F+++  I RWT A   IS
Sbjct: 35  ISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEIS 67


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 520 ILTLVWHGFFVQFITLTNITYSCPL-FTFIDL 428
           +LT++W   FVQ +++   T S PL  +F+ +
Sbjct: 639 VLTMLWITLFVQALSVNPFTESAPLKLSFVQM 670


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 520 ILTLVWHGFFVQFITLTNITYSCPLFTFIDLIKSKLI*TYDKQLMEITG---YPTFWIIE 350
           ++ L +  F+V    L  + YS  L+ F  ++ SKL   + + L+  +    +   WI++
Sbjct: 58  LVGLAYQIFYVTLDPLDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSAAVVHVICWILQ 117

Query: 349 II 344
            I
Sbjct: 118 FI 119


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 61  KINMNSVRILIFVAICVMFVSTVTAWDFFKELEGVGQRVRDAIISAGPAIDVLQ 222
           K++    + L+FV  CV  V+      +FK     G ++  A+  AGP  DVLQ
Sbjct: 261 KLDSFVYQCLLFVGKCVNRVTPYLERFWFKC--HYGSKLGTALQVAGPGFDVLQ 312


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 267 SFFIRVTAVCDVFSLLQYIDRWTSANYRISHSLADTFKFFEKV 139
           S  + +   CD    LQY+++  ++   +  + A T + FEK+
Sbjct: 340 SALVELIGACDKVDDLQYMEQLHNSTDLLKKAFAYTSEVFEKI 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,989
Number of Sequences: 5004
Number of extensions: 34188
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)