Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G10
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.36 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 114 VCFNGDSVGLFQRT*RCRPESERCD--N*RWSSDRCTAK 224
           V FNGD   L +    C P  + CD  +      RCT K
Sbjct: 423 VAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGK 461


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 201 TSANYRIS-HSLADTFKFFEKVPRCHR*NKHDANGDENQNSNR 76
           T   Y IS +SL    + F++   CH  ++++ +  E++NS R
Sbjct: 206 TCKKYAISSNSLGSRSRSFQRTSSCH--SRYEDSRHEDRNSYR 246


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 451 PLFTFIDLIKSKLI*TYDKQL 389
           P FT+  LI+  +I + DKQL
Sbjct: 505 PPFTYASLIRQSIIESPDKQL 525


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 257 MKNDIHIL*Y*VPKGIN 307
           +KN  H++ Y +PKGI+
Sbjct: 517 IKNVSHVINYDLPKGID 533


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 120 NKHDANGDENQNSNRVHVYFLF 55
           N H  N D ++ S  V V FL+
Sbjct: 317 NYHHRNADTHEMSEWVKVVFLY 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,068
Number of Sequences: 438
Number of extensions: 2307
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)