Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G08
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    29   0.27 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    28   0.46 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    28   0.61 
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      27   1.4  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   3.3  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   5.7  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    24   7.6  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    24   10.0 
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    24   10.0 

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 31  SPRTKTWGCSTGPVTSVDLMESGARDCREPEMD 129
           +PR++     + PV S++L +SG+R+C   E+D
Sbjct: 261 APRSQANPFFSSPVRSLELFKSGSRNCLHLELD 293


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 294 NFHYTKNSRFIHKTVNIFGYCFLRN 368
           N HY     F+H  + I+  CFL N
Sbjct: 355 NLHYNSKKEFVHDLMLIWSNCFLYN 379


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 194 HVVTTTIFDLPVHIQIHNADQ 132
           H+   ++ DLP +IQIH+ DQ
Sbjct: 362 HIPNLSLIDLPGYIQIHSEDQ 382


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 57  FYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMTQRL-DMY 215
           F+G S   GP G     L   ++G++   +DL+  + ++     +   R+ D+Y
Sbjct: 213 FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLY 266


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 14  HFG*REARAQRLGAVLRVQ 70
           H+G R   AQRLG +LR +
Sbjct: 638 HYGSRRQEAQRLGRILRAK 656


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 64  GPVTSVDLMESGARDCREPEMD 129
           GP T V  +  G   C+ PEM+
Sbjct: 84  GPATKVGAIVGGQTSCKAPEMN 105


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 149 IHNADQQSISGSRQSRAPDSIR 84
           I N D Q  SGS Q+  PD  R
Sbjct: 477 IENTDNQGDSGSFQTSTPDDSR 498


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 231 KVLDLDYEPQVVHEK*KIYYINFH 302
           K+L  DYE  +V++  + +Y+ FH
Sbjct: 14  KLLMSDYEVTLVNDNMQEFYVRFH 37


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 138 SVMDLNMNRQIKDRRCYYMTQRLDMYADSLRKVLD 242
           S + L ++R   + + YY  QR   Y D+  KVLD
Sbjct: 243 STIYLLLDRNPDNHQYYYNLQRAYGYEDASGKVLD 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,649,383
Number of Sequences: 5004
Number of extensions: 33368
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)