Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G08
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   106   7e-24
02_05_1317 - 35683659-35683756,35683904-35683966,35684068-356841...    27   5.5  
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879...    27   5.5  
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    27   7.2  
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    27   7.2  
05_04_0279 + 19724662-19724700,19725344-19726369                       26   9.5  
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846     26   9.5  
04_01_0029 + 372486-373426,373533-373938,374380-374832                 26   9.5  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  106 bits (254), Expect = 7e-24
 Identities = 51/88 (57%), Positives = 60/88 (68%)
 Frame = +3

Query: 3   PNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRR 182
           PN FTS DGKP H D G FYGSS+F  PD    P LSR RDGL+IS MDLN+ RQIKD+ 
Sbjct: 322 PNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKW 381

Query: 183 CYYMTQRLDMYADSLRKVLDLDYEPQVV 266
            + MT R D YA  L + L  D++PQV+
Sbjct: 382 GFRMTARYDTYASLLSEYLKPDFKPQVI 409


>02_05_1317 -
           35683659-35683756,35683904-35683966,35684068-35684182,
           35684385-35684486,35684687-35684756,35684878-35684952,
           35685188-35685279,35685386-35685493,35685560-35685640,
           35685728-35685771,35685858-35685984
          Length = 324

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 189 YMTQRLDMYADSLRKVLDLDYEPQVVHEK*KIYYINFH 302
           Y  Q + +  DS+RK+L LD+E  +     +I+Y + H
Sbjct: 267 YSRQPVSLQLDSMRKLLKLDFEWFLPGHGYRIHYKDVH 304


>01_01_1111 -
           8791925-8792649,8793506-8793890,8794341-8794618,
           8794998-8795163
          Length = 517

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 101 APDSIRSTEVTGPVEQPQVFVRGLPVSRSE 12
           AP S+ STE   P  +P V V   PV+ +E
Sbjct: 182 APPSVISTEQLNPAAEPVVGVEAAPVTVAE 211


>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 291 INFHYTKNSR-FIHKTVNIFGYCFLRNK 371
           INF + K S  ++H+    +G+C   NK
Sbjct: 457 INFDFPKTSETYLHRICYTYGFCLFTNK 484


>02_02_0574 -
           11701359-11701460,11701469-11701570,11701725-11701922,
           11702090-11704052,11705312-11706126
          Length = 1059

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -2

Query: 212 HVQTLCHVVTTTIFDLPVHIQ 150
           HV+ + H+++ + +DLP H++
Sbjct: 404 HVENMRHILSISYYDLPAHLR 424


>05_04_0279 + 19724662-19724700,19725344-19726369
          Length = 354

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 81  GPDGVRCPGLSRTRDGLLISVMDLNMNRQI 170
           GP+G R  GL   +  +++S +DL  +RQ+
Sbjct: 274 GPNGRRLGGLPFAKSLIIVSGLDLTCDRQL 303


>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
          Length = 293

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 34  PRTKTWGCSTGPVTSVDLMESGARDCREPE 123
           P +  W C  GP +S D  + G  D ++ +
Sbjct: 232 PSSYAWVCGQGPASSSDWFDRGLDDVKQQQ 261


>04_01_0029 + 372486-373426,373533-373938,374380-374832
          Length = 599

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 120 RDGLLISVMDLNMNRQIKDRRCYYMTQRL 206
           R G +  +  L M  QIK+ +C+   QRL
Sbjct: 425 RQGRMNKIRGLQMQEQIKNGQCWKQVQRL 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,173,178
Number of Sequences: 37544
Number of extensions: 205298
Number of successful extensions: 486
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)