Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G08
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   5e-14
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   1.1  
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         29   1.8  
SB_23087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_53284| Best HMM Match : DUF1279 (HMM E-Value=1.5)                   27   5.6  
SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_29510| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_14179| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)                 27   5.6  
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)                     27   5.6  
SB_3882| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_36922| Best HMM Match : Herpes_US12 (HMM E-Value=3)                 26   9.8  

>SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 33/60 (55%), Positives = 46/60 (76%)
 Frame = +3

Query: 96  RCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMTQRLDMYADSLRKVLDLDYEPQVVHEK 275
           R  GLSRTRDGLL++ +DLN+ RQ+KD+  + MT RL+MYA SL + +  +YEP +VHE+
Sbjct: 38  RYHGLSRTRDGLLVTEVDLNLCRQVKDKWGFQMTSRLEMYAKSLSEAVQRNYEPPIVHEE 97


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 181 RRSLICLFIFKSITLISNPSLVRDNPGHRTPS 86
           R  +I +FIF +  +ISN  L R  PG+  PS
Sbjct: 5   RSGVISIFIFLTRVIISNGQLSRLQPGNTAPS 36


>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 181 RRSLICLFIFKSITLISNPSLVRDNPGHRTPS 86
           R  +I +FIF +  +ISN  L R  PG+  PS
Sbjct: 5   RSGVISIFIFLTRVIISNGQLSRLQPGNTAPS 36


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 178 RSLICLFIFKSITLISNPSLVRDNPGHRTPSGPQK*LDP*NSPKSLCAG 32
           R+ ICL +  +I  +S  S  RD  GHR P+G    + P   P  + AG
Sbjct: 783 RNAICLVL--AIYPLSRTSRGRDISGHRNPTGRLNNVRPAPGPDGIPAG 829


>SB_23087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 31  SPRTKTWGCSTGPVTSVDLMESGARDCREPEMD 129
           S R++ +G S    +S  ++  G R+CR+P ++
Sbjct: 277 SSRSRVFGSSNAKQSSEQVIRRGHRECRQPRLE 309


>SB_53284| Best HMM Match : DUF1279 (HMM E-Value=1.5)
          Length = 427

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  SPRTKTWGCSTGPVTSVDLMESGARDCREPEMD 129
           S R++  G S    +S  ++  G R+CR+P ++
Sbjct: 267 SSRSRVLGSSNAKQSSEQVIRRGHRECRQPRLE 299


>SB_50141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  SPRTKTWGCSTGPVTSVDLMESGARDCREPEMD 129
           S R++  G S    +S  ++  G R+CR+P ++
Sbjct: 187 SSRSRVLGSSNAKQSSEQVIRRGHRECRQPRLE 219


>SB_29510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 116 SRQSRAPDSIRSTEVTGPVEQPQVFVRGLPVSRSELI 6
           S  SRAPD  R ++ TG  ++P   + G P +    I
Sbjct: 39  STGSRAPDGSRRSKRTGTGQKPGATINGSPTAGESTI 75


>SB_14179| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)
          Length = 313

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  SPRTKTWGCSTGPVTSVDLMESGARDCREPEMD 129
           S R++  G S    +S  ++  G R+CR+P ++
Sbjct: 235 SSRSRVLGSSNAKQSSEQVIRRGHRECRQPRLE 267


>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 803

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 105 PGTGLHQVHRSNWTRRTAPSLCARASRQ 22
           PG G    + SNW R T+PS  A+ + Q
Sbjct: 676 PGRGRKSPNPSNWGRSTSPSNRAQVNNQ 703


>SB_3882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  SPRTKTWGCSTGPVTSVDLMESGARDCREPEMD 129
           S R++  G S    +S  ++  G R+CR+P ++
Sbjct: 307 SSRSRVLGSSNAKQSSEQVIRRGHRECRQPRLE 339


>SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  SPRTKTWGCSTGPVTSVDLMESGARDCREPEMD 129
           S R++  G S    +S  ++  G R+CR+P ++
Sbjct: 18  SSRSRVLGSSNAKQSSEHVIRHGHRECRQPRLE 50


>SB_36922| Best HMM Match : Herpes_US12 (HMM E-Value=3)
          Length = 154

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 93  VRCPGLSRTRDGLLISVMDLNMNRQIKDRRC 185
           V CPGLS  R+  +  V+D    R  KD  C
Sbjct: 52  VNCPGLSVFRESQVSHVLDPGSFRPQKDYAC 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,095,194
Number of Sequences: 59808
Number of extensions: 244519
Number of successful extensions: 645
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)