Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G08
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   112   8e-26
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    29   1.6  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    29   1.6  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      29   1.6  
Z99288-2|CAB16547.1|  353|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z82060-6|CAB04887.1|  301|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z71258-5|CAA95784.2|  452|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z70213-2|CAA94171.1|  304|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  112 bits (270), Expect = 8e-26
 Identities = 51/91 (56%), Positives = 64/91 (70%)
 Frame = +3

Query: 3   PNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRR 182
           PNEFTS +G+PAHKD G FYGSSY   PDG R P LSR R+G+LI+ +DLN+ RQ KD  
Sbjct: 297 PNEFTSGNGQPAHKDFGHFYGSSYIAAPDGSRTPALSRVREGVLIAELDLNLCRQCKDAW 356

Query: 183 CYYMTQRLDMYADSLRKVLDLDYEPQVVHEK 275
            + MT RLDMYA  + +V + DY P +  E+
Sbjct: 357 GFRMTNRLDMYAQKITEVSNPDYRPDIRREQ 387


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 39  HKDLGLFYGSSYF--CGPDGVRCPGLSRTRDGLLISVMDLNMNR 164
           H++  L  GSS    C   G   PG+S  RDGL I + D  +++
Sbjct: 431 HQNQTLMVGSSAILPCQASGKPTPGISWLRDGLPIDITDSRISQ 474


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 39  HKDLGLFYGSSYF--CGPDGVRCPGLSRTRDGLLISVMDLNMNR 164
           H++  L  GSS    C   G   PG+S  RDGL I + D  +++
Sbjct: 431 HQNQTLMVGSSAILPCQASGKPTPGISWLRDGLPIDITDSRISQ 474


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 39  HKDLGLFYGSSYF--CGPDGVRCPGLSRTRDGLLISVMDLNMNR 164
           H++  L  GSS    C   G   PG+S  RDGL I + D  +++
Sbjct: 431 HQNQTLMVGSSAILPCQASGKPTPGISWLRDGLPIDITDSRISQ 474


>Z99288-2|CAB16547.1|  353|Caenorhabditis elegans Hypothetical
           protein ZK262.2 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 25  TGSPRTKTWGCSTGPVTSVDLMESGARDCR 114
           TG PR + +GCS  P   +D    G  D R
Sbjct: 278 TGLPRNEDFGCSNAPKVDLDDTNQGVWDHR 307


>Z82060-6|CAB04887.1|  301|Caenorhabditis elegans Hypothetical
           protein T27F6.8 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 176 IFDLPVHIQIHNADQQS 126
           IFD+P+H+ +H  DQ S
Sbjct: 51  IFDMPMHLMLHVIDQMS 67


>Z71258-5|CAA95784.2|  452|Caenorhabditis elegans Hypothetical
           protein C01H6.6 protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  YFCGPDGVRCPGLSRTRDGLLISVMDLNMN 161
           YF  P  V C GLS T  GL +++M  ++N
Sbjct: 97  YFMMPLLVLCLGLSATFSGLNLAIMSFSIN 126


>Z70213-2|CAA94171.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK930.2 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 338 YSFMNKSRVFCVVKIYIIYFLLFMYDLRFVV 246
           + F+ K+ +F  +  +I +FL F    RFV+
Sbjct: 12  FLFLQKTSLFISISSFIFFFLSFHETCRFVI 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,142,329
Number of Sequences: 27780
Number of extensions: 191606
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)