Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G08
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...   107   3e-24
At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protei...    30   0.49 
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei...    30   0.49 
At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo sapi...    27   4.6  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.6  
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    27   6.1  
At1g53390.1 68414.m06052 ABC transporter family protein similar ...    27   6.1  
At5g44350.1 68418.m05431 ethylene-responsive nuclear protein -re...    26   8.0  
At2g36560.1 68415.m04484 DNA-binding protein-related contains Pf...    26   8.0  

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score =  107 bits (257), Expect = 3e-24
 Identities = 51/90 (56%), Positives = 62/90 (68%)
 Frame = +3

Query: 3   PNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRR 182
           PN FTS DGKP H D G FYGSS+F  PD    P LSR +DGLLIS MDLN+ RQ KD+ 
Sbjct: 311 PNPFTSGDGKPQHNDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQYKDKW 370

Query: 183 CYYMTQRLDMYADSLRKVLDLDYEPQVVHE 272
            + MT R ++YAD L K +  D++PQVV +
Sbjct: 371 GFRMTARYEVYADLLAKYIKPDFKPQVVSD 400


>At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 326

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 57  FYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMTQRLDMY 215
           FYG+S+  GP G          + +L++  DL+M +  +     +  +R D+Y
Sbjct: 264 FYGTSFIAGPTGEIVAEADDKSEAVLVAQFDLDMIKSKRQSWGVFRDRRPDLY 316


>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 299

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 57  FYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMTQRLDMY 215
           FYG+S+  GP G          + +L++  DL+M +  +     +  +R D+Y
Sbjct: 237 FYGTSFIAGPTGEIVAEADDKSEAVLVAQFDLDMIKSKRQSWGVFRDRRPDLY 289


>At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo
           sapiens, PID:d1034112
          Length = 434

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +3

Query: 60  YGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMTQRLDMYADSLRKVL 239
           Y   +    + + C  +S+ R+   I  +D N  +  +DR   Y+ +  D+   +++ +L
Sbjct: 33  YRLPFTLSDENLSCLPISQAREPPPIFNLDPNSVKDTQDRNKLYLAKAWDLLKPAIKIIL 92

Query: 240 DLD 248
           D D
Sbjct: 93  DDD 95


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 146 HNADQQSISGSRQSRAPDSIRS 81
           HNA+    +GS Q R P S+RS
Sbjct: 538 HNAEANGETGSAQHRIPSSVRS 559


>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein similar
            to lysosomal alpha-mannosidase SP:O09159 from [Mus
            musculus]
          Length = 1047

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 149  IHNADQQSISGSRQSRAPDSIRSTEVTGPVEQPQVFVRGLPVSRSELI 6
            I    + S+S +++          +V G  EQP   +RG PV +S L+
Sbjct: 973  IKEVTEMSLSANQEKVKMKEKMKWKVEGEAEQPSSPLRGGPVDKSTLV 1020


>At1g53390.1 68414.m06052 ABC transporter family protein similar to
           ATP-binding cassette, sub-family G, member 2
           (Placenta-specific ATP- binding cassette transporter)
           (Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
           sapiens]
          Length = 1092

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 49  WGCSTGPVTSVDLMESGARDCREPEMDC 132
           WGCS  P   VDL  S  +D  E   +C
Sbjct: 168 WGCSVDPTEQVDLQNS--KDFPERRRNC 193


>At5g44350.1 68418.m05431 ethylene-responsive nuclear protein
           -related contains weak similarity to ethylene-regulated
           nuclear protein ERT2 [Arabidopsis thaliana]
           gi|2765442|emb|CAA75349
          Length = 334

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 297 NLYNIFFTFHVRLEVRSPNLRLS*--GYLRTCPNAVSCSNNDDL 172
           +L ++FF    RL+ +SP+ R       +RT PNA S SN D +
Sbjct: 34  SLIDLFFKNRDRLK-KSPSKRFQRIERQIRTAPNASSLSNQDTI 76


>At2g36560.1 68415.m04484 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 574

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 164 PVHIQIHNADQQSISGSRQSRAPDSIRSTEVTGPVEQPQV 45
           P H Q  N++         +  P+++ S+  TGPV+QP++
Sbjct: 307 PSHSQKRNSESNKTMVVLSATPPNTLASSS-TGPVQQPEM 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,485,026
Number of Sequences: 28952
Number of extensions: 171407
Number of successful extensions: 413
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)