Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_G07
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 27 2.0
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 27 2.6
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 26 3.5
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 4.6
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 26 4.6
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 6.1
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 25 6.1
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 6.1
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 8.1
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 25 8.1
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 2.0
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Frame = -2
Query: 553 NLNKPFNIETDPYEFSAIAEASVIGLYDDR*NFPVAVEI-------------*ILVQFPI 413
N N + I +PY +S++AEAS +Y P I + V+FP
Sbjct: 704 NHNNIYQISQEPYTWSSVAEASRRAMYIRYSLLPYWYTIMAKASQDGTPALRALFVEFPN 763
Query: 412 DP-----ERVLVVASDLQFVFIFGESLERVGGVFP 323
DP +R +V L + ++E V GVFP
Sbjct: 764 DPTLADVDRQFMVGDSLLVTPVLEPNVEYVQGVFP 798
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 483 ITDASAIALNSYGSVSM-LKGLLRFTSVSG 569
+TDA IA N GSVS G+ +FT V G
Sbjct: 516 VTDADGIATNVAGSVSSGSAGIPKFTVVEG 545
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = +2
Query: 176 KGCLINRNSEATPYTPLLLNHSSTLPQFETVNEFIVVEPGTTFKLSCHNRENTPNSFQRF 355
+G +N + A P NH L Q E ++ + E + F L H R + S +R+
Sbjct: 267 QGLRVNLDLHAAPGNQNSWNHGGYLNQMEWLDGTVKGEENSQFTLKIHERLASFFSQKRY 326
Query: 356 PEDEYELEVTCNHEDTFWVDGKLYKYSDFH 445
+ + N + F +D +K +D+H
Sbjct: 327 -RNVVTIYGALNEPNFFVLDE--HKITDWH 353
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 4.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 281 VVEPGTTFKLSCHNRENTPNSFQRFPEDEYELE-VTCNHEDTFWVDGKLYKYSDFHCNRK 457
+++ F+ R+ N F + + E LE + + GK+ SD+ RK
Sbjct: 33 IIKTRRVFEEKLARRQVKLNDFLSYIQYEINLETLRAKRHKRLNITGKI-TISDYAGPRK 91
Query: 458 VLPVVIKTDNRCLGDST 508
VL + ++ N+ GD T
Sbjct: 92 VLFLFLRATNKFFGDVT 108
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 341 SFQRFPEDEYELEVTCNHEDTFWVDGKLYKYSDFHCNR 454
SF ED++ E N T+ ++G Y ++C +
Sbjct: 334 SFTNVTEDKFNKEYRYNIRHTYGLEGNRKNYKGYNCQQ 371
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 504 LSPRHRLSVFMTTG-KTFLLQWKSEYLYSFPSTQNVSSWLQVT 379
L RH L++ T KTFLL+ + P+ QNV W+ T
Sbjct: 202 LVARHPLALLKTEQEKTFLLRARLLNGLDVPNLQNVYDWVWCT 244
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 564 THL*ISISPLTLKPTRTSSVLSPRHRLSVFMTTGKTFLLQWKSEYLYSFPSTQNVSSWLQ 385
T L IS L L T ++SVL+ S + +G T LLQ + + + NV S ++
Sbjct: 278 TALLISKKVLFLTKTSSASVLADFVLSSCALVSGATGLLQGLTRITFPYIDLSNVESLVK 337
Query: 384 V 382
+
Sbjct: 338 L 338
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 6.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 405 NVSSWLQVTSSSYSSSGNLWKELGVFSLLWQDNLKVVPGSTTINSFTVSNCG 250
+VS+ L SGN+W L S L N V +++ N VSN G
Sbjct: 61 SVSAKLDSQRKLSLKSGNMWDSLNAPSELTSKNPTVSSTTSSANPAIVSNGG 112
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 200 SEATPYTPLLLNHSSTLPQFETVNEFIVVEPGTTFKLSCHNRENTPNSFQRFPEDEYELE 379
S TP L+HS+ L F T NE+ G+ S N+EN +S + + EL+
Sbjct: 126 SYITPRKGSPLSHSTPLSMFRTKNEY-----GSNKGFSHINKENADDSLIQQLYERIELQ 180
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 432 YLYSFPSTQNVSSWLQV 382
+LYSF S ++V WLQ+
Sbjct: 316 HLYSFSSVKSVVHWLQI 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,151
Number of Sequences: 5004
Number of extensions: 56225
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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