Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G07
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    34   0.095
02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523     28   4.7  
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103...    28   6.2  
04_03_0822 - 20054832-20055179,20056794-20056847,20057561-200576...    28   6.2  
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    28   6.2  

>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 33.9 bits (74), Expect = 0.095
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +2

Query: 182 CLINRNSEATPYTPLLLNHSSTLPQFETVNEFIVVEPGTTFKLSCHNRENTPNS--FQRF 355
           CL+  +  + P  P  L  SST+P +  VNE++ +  G+T  LSC N  +  ++  F +F
Sbjct: 820 CLVYPDPPSKPALPPALPQSSTVPSY--VNEYVSLRGGST--LSCENSSSASDAELFLKF 875

Query: 356 PE 361
            E
Sbjct: 876 GE 877


>02_03_0372 + 18273141-18274767,18275136-18276023,18276117-18276523
          Length = 973

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 324 GKTPPTLSRDSPKMNTNWRSLATTRTRSGSMGNCTSIQ 437
           G+ PP L R S     N    + + T  G+MGN TS+Q
Sbjct: 110 GEIPPELGRLSRLQYLNLNRNSLSGTIPGAMGNLTSLQ 147


>05_03_0389 -
           13409848-13409964,13410049-13410114,13410209-13410325,
           13410822-13410893,13410979-13411258,13411528-13411730,
           13412230-13412316,13412705-13412758,13413042-13413221,
           13414402-13414576,13414628-13414918,13414923-13415344
          Length = 687

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 300 VVPGSTTINSFTVSNCGKVEEWFRSNGV 217
           V P +  +  FT S  GKV++WF +N V
Sbjct: 72  VSPDTIRLRLFTFSLLGKVKQWFYTNRV 99


>04_03_0822 -
           20054832-20055179,20056794-20056847,20057561-20057657,
           20057752-20057780
          Length = 175

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 330 TPPTLSRDSPKMNTNWRSLATTRTRSGSMGNCTSIQISTAT 452
           T PT +  SPKM  +W S A+  +  G  G+      + AT
Sbjct: 92  TTPTGAAASPKMRRSWSSAASASSGGGGHGSGPKCVCAPAT 132


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 260 ETVNEFIVVEPGTTFKLSCHNRENTPNSFQRFPEDE-YELEVTCNHEDTFWVDGKLYKYS 436
           E ++  +V+ P ++ K     R + P S    PE   Y L++  +HE+   V  K   ++
Sbjct: 379 EALSSSMVLTPTSSNKHKAIARVSAPTSGGALPELVLYLLDLGMDHEEIKNVVRKFPAFA 438

Query: 437 DFHCNRKVLPVV 472
            ++ +RK+ P+V
Sbjct: 439 YYNVDRKIKPLV 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,290,158
Number of Sequences: 37544
Number of extensions: 356023
Number of successful extensions: 928
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)